DESCRIPTION

Package: clusterProfiler
Type: Package
Title: A universal enrichment tool for interpreting omics data
Version: 4.7.0
Authors@R: c(
    person(given = "Guangchuang", family = "Yu",        email = "guangchuangyu@gmail.com",   role  = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")),
    person(given = "Li-Gen",      family = "Wang",      email = "reeganwang020@gmail.com",   role  = "ctb"),
    person(given = "Erqiang",     family = "Hu",        email = "woshihuerqiang@qq.com",     role = "ctb"),
    person(given = "Xiao",        family = "Luo",       email = "l77880853349@163.com",      role  = "ctb"),
    person(given = "Meijun",      family = "Chen",      email = "mjchen1996@outlook.com",    role  = "ctb"),
    person(given = "Giovanni",    family = "Dall'Olio", email = "giovanni.dallolio@upf.edu", role = "ctb"),
    person(given = "Wanqian",     family = "Wei",       email = "altair_wei@outlook.com",    role = "ctb"),
    person(given = "Chun-Hui",    family = "Gao",       email = "gaospecial@gmail.com",      role = "ctb", comment = c(ORCID = "0000-0002-1445-7939"))
	)
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Description: This package supports functional characteristics of both coding and non-coding genomics data for thousands of species with up-to-date gene annotation. It provides a univeral interface for gene functional annotation from a variety of sources and thus can be applied in diverse scenarios. It provides a tidy interface to access, manipulate, and visualize enrichment results to help users achieve efficient data interpretation. Datasets obtained from multiple treatments and time points can be analyzed and compared in a single run, easily revealing functional consensus and differences among distinct conditions.
Depends:
    R (>= 3.5.0)
Imports:
    AnnotationDbi,
    downloader,
    DOSE (>= 3.23.2),
    dplyr,
    enrichplot (>= 1.9.3),
    GO.db,
    GOSemSim,
    gson (>= 0.0.7),
    magrittr,
    methods,
    plyr,
    qvalue,
    rlang,
    stats,
    tidyr,
    utils,
    yulab.utils
Suggests:
    AnnotationHub,
    knitr,
    rmarkdown,
    org.Hs.eg.db,
    prettydoc,
    ReactomePA,
    testthat
VignetteBuilder: knitr
ByteCompile: true
License: Artistic-2.0
URL: https://yulab-smu.top/biomedical-knowledge-mining-book/ (docs), https://doi.org/10.1016/j.xinn.2021.100141 (paper)
BugReports: https://github.com/GuangchuangYu/clusterProfiler/issues
Packaged: NA
biocViews: Annotation, Clustering, GeneSetEnrichment, GO, KEGG,
    MultipleComparison, Pathways, Reactome, Visualization
Encoding: UTF-8
RoxygenNote: 7.2.1