DESCRIPTION

Package: hacksig
Type: Package
Title: A Tidy Framework to Hack Gene Expression Signatures
Version: 0.2.0
Authors@R: c(person(given = "Andrea", 
                    family = "Carenzo", 
                    email = "andrea.carenzo@gmail.com",
                    role = c("aut", "cre"), 
                    comment = c(ORCID = "0000-0001-6804-9984")),
             person(given = "Loris",
                    family = "De Cecco",
                    email = "loris.dececco@istitutotumori.mi.it",
                    role = "aut",
                    comment = c(ORCID = "0000-0002-7066-473X")),
             person(given = "Federico",
                    family = "Pistore",
                    email = "federico.pistore@istitutotumori.mi.it",
                    role = "aut",
                    comment = c(ORCID = "0000-0002-3254-9247")))
Description: A collection of cancer transcriptomics gene signatures as well as a 
    simple and tidy interface to compute single sample enrichment scores either 
    with the original procedure or with three alternatives:
    the "combined z-score" of Lee et al. (2008) <doi:10.1371/journal.pcbi.1000217>,
    the "single sample GSEA" of Barbie et al. (2009) <doi:10.1038/nature08460> and 
    the "singscore" of Foroutan et al. (2018) <doi:10.1186/s12859-018-2435-4>.
    The 'get_sig_info()' function can be used to retrieve information about each 
    signature implemented.
License: MIT + file LICENSE
URL: https://github.com/Acare/hacksig,
    https://acare.github.io/hacksig/
BugReports: https://github.com/Acare/hacksig/issues
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
Depends: 
    R (>= 4.0)
Imports: 
    data.table (>= 1.14),
    future.apply (>= 1.8.1),
    rlang (>= 0.4.11),
    stats (>= 4.0.5),
    tibble (>= 3.1.5)
Suggests: 
    covr,
    dplyr (>= 1.0.7),
    future (>= 1.22.1),
    ggplot2 (>= 3.3.5),
    knitr (>= 1.36),
    msigdbr (>= 7.4.1),
    purrr (>= 0.3.4),
    reactable (>= 0.4.1),
    rmarkdown (>= 2.11),
    tidyr (>= 1.1.4)
VignetteBuilder: knitr