Sim(Bert_BiGRU).py

import numpy as np
import pandas as pd
import tensorflow as tf
import transformers
import os

max_length = 128  # Maximum length of input sentence to the model.
batch_size = 32
epochs = 2

# Labels in our dataset.
labels = ["contradiction", "entailment", "neutral"]


# There are more than 550k samples in total; we will use 100k for this example.
train_df = pd.read_csv("SNLI_Corpus/snli_1.0_train.csv", nrows=100000)
valid_df = pd.read_csv("SNLI_Corpus/snli_1.0_dev.csv")
test_df = pd.read_csv("SNLI_Corpus/snli_1.0_test.csv")

# Shape of the data
print(f"Total train samples : {train_df.shape[0]}")
print(f"Total validation samples: {valid_df.shape[0]}")
print(f"Total test samples: {valid_df.shape[0]}")

print(f"Sentence1: {train_df.loc[1, 'sentence1']}")
print(f"Sentence2: {train_df.loc[1, 'sentence2']}")
print(f"Similarity: {train_df.loc[1, 'similarity']}")

# We have some NaN entries in our train data, we will simply drop them.
print("Number of missing values")
print(train_df.isnull().sum())
train_df.dropna(axis=0, inplace=True)

print("Train Target Distribution")
print(train_df.similarity.value_counts())


print("Validation Target Distribution")
print(valid_df.similarity.value_counts())

train_df = (
    train_df[train_df.similarity != "-"]
    .sample(frac=1.0, random_state=42)
    .reset_index(drop=True)
)
valid_df = (
    valid_df[valid_df.similarity != "-"]
    .sample(frac=1.0, random_state=42)
    .reset_index(drop=True)
)

train_df["label"] = train_df["similarity"].apply(
    lambda x: 0 if x == "contradiction" else 1 if x == "entailment" else 2
)
y_train = tf.keras.utils.to_categorical(train_df.label, num_classes=3)

valid_df["label"] = valid_df["similarity"].apply(
    lambda x: 0 if x == "contradiction" else 1 if x == "entailment" else 2
)
y_val = tf.keras.utils.to_categorical(valid_df.label, num_classes=3)

test_df["label"] = test_df["similarity"].apply(
    lambda x: 0 if x == "contradiction" else 1 if x == "entailment" else 2
)
y_test = tf.keras.utils.to_categorical(test_df.label, num_classes=3)


class BertSemanticDataGenerator(tf.keras.utils.Sequence):
    """Generates batches of data.

    Args:
        sentence_pairs: Array of premise and hypothesis input sentences.
        labels: Array of labels.
        batch_size: Integer batch size.
        shuffle: boolean, whether to shuffle the data.
        include_targets: boolean, whether to incude the labels.

    Returns:
        Tuples `([input_ids, attention_mask, `token_type_ids], labels)`
        (or just `[input_ids, attention_mask, `token_type_ids]`
         if `include_targets=False`)
    """

    def __init__(
        self,
        sentence_pairs,
        labels,
        batch_size=batch_size,
        shuffle=True,
        include_targets=True,
    ):
        self.sentence_pairs = sentence_pairs
        self.labels = labels
        self.shuffle = shuffle
        self.batch_size = batch_size
        self.include_targets = include_targets
        # Load our BERT Tokenizer to encode the text.
        # We will use base-base-uncased pretrained model.
        self.tokenizer = transformers.BertTokenizer.from_pretrained(
            "bert-base-uncased", do_lower_case=True
        )
        self.indexes = np.arange(len(self.sentence_pairs))
        self.on_epoch_end()

    def __len__(self):
        # Denotes the number of batches per epoch.
        return len(self.sentence_pairs) // self.batch_size

    def __getitem__(self, idx):
        # Retrieves the batch of index.
        indexes = self.indexes[idx * self.batch_size : (idx + 1) * self.batch_size]
        sentence_pairs = self.sentence_pairs[indexes]

        # With BERT tokenizer's batch_encode_plus batch of both the sentences are
        # encoded together and separated by [SEP] token.
        encoded = self.tokenizer.batch_encode_plus(
            sentence_pairs.tolist(),
            add_special_tokens=True,
            max_length=max_length,
            return_attention_mask=True,
            return_token_type_ids=True,
            pad_to_max_length=True,
            return_tensors="tf",
        )

        # Convert batch of encoded features to numpy array.
        input_ids = np.array(encoded["input_ids"], dtype="int32")
        attention_masks = np.array(encoded["attention_mask"], dtype="int32")
        token_type_ids = np.array(encoded["token_type_ids"], dtype="int32")

        # Set to true if data generator is used for training/validation.
        if self.include_targets:
            labels = np.array(self.labels[indexes], dtype="int32")
            return [input_ids, attention_masks, token_type_ids], labels
        else:
            return [input_ids, attention_masks, token_type_ids]

    def on_epoch_end(self):
        # Shuffle indexes after each epoch if shuffle is set to True.
        if self.shuffle:
            np.random.RandomState(42).shuffle(self.indexes)


# Create the model under a distribution strategy scope.
strategy = tf.distribute.MirroredStrategy()

with strategy.scope():
    # Encoded token ids from BERT tokenizer.
    input_ids = tf.keras.layers.Input(
        shape=(max_length,), dtype=tf.int32, name="input_ids"
    )
    # Attention masks indicates to the model which tokens should be attended to.
    attention_masks = tf.keras.layers.Input(
        shape=(max_length,), dtype=tf.int32, name="attention_masks"
    )
    # Token type ids are binary masks identifying different sequences in the model.
    token_type_ids = tf.keras.layers.Input(
        shape=(max_length,), dtype=tf.int32, name="token_type_ids"
    )
    # Loading pretrained BERT model.
    from transformers import BertModel, TFBertModel
    bert_model = transformers.TFBertModel.from_pretrained("bert-base-uncased")
    # Freeze the BERT model to reuse the pretrained features without modifying them.
    bert_model.trainable = False

    sequence_output, pooled_output = bert_model.bert(
        input_ids, attention_mask=attention_masks, token_type_ids=token_type_ids
    )
    # Add trainable layers on top of frozen layers to adapt the pretrained features on the new data.
    biGRU = tf.keras.layers.Bidirectional(
        tf.keras.layers.GRU(64, return_sequences=True)
    )(sequence_output)
    # bilstm = tf.keras.layers.Bidirectional(
    #     tf.keras.layers.LSTM(64, return_sequences=True)
    # )(sequence_output)

    # CNN = tf.keras.layers.Conv1D(filters=32, kernel_size= 5, activation='relu')(sequence_output)
    # avg_pool = tf.keras.layers.AveragePooling1D(3)(CNN)
    # CNN = tf.keras.layers.Conv1D(filters=32, kernel_size=5, activation='relu')(avg_pool)
    # max_pool = tf.keras.layers.MaxPooling1D(3)(CNN)
    # CNN = tf.keras.layers.Conv1D(filters=32, kernel_size=5, activation='relu')(sequence_output)
    # avg_pool = tf.keras.layers.GlobalAveragePooling1D()(CNN)
    # max_pool = tf.keras.layers.GlobalMaxPooling1D()(CNN)
    # concat = tf.keras.layers.concatenate([avg_pool, max_pool])
    # Applying hybrid pooling approach to biGRU sequence output.
    avg_pool = tf.keras.layers.GlobalAveragePooling1D()(biGRU)
    max_pool = tf.keras.layers.GlobalMaxPooling1D()(biGRU)
    # avg_pool1 = tf.keras.layers.GlobalAveragePooling1D()(bilstm)
    # max_pool1 = tf.keras.layers.GlobalMaxPooling1D()(bilstm)
    concat = tf.keras.layers.concatenate([avg_pool, max_pool])
    # concat1 = tf.keras.layers.concatenate([avg_pool1, max_pool1])
    # concat_all = tf.keras.layers.concatenate([concat, concat1])

    dropout = tf.keras.layers.Dropout(0.3)(concat)
    output = tf.keras.layers.Dense(3, activation="softmax")(dropout)
    model = tf.keras.models.Model(
        inputs=[input_ids, attention_masks, token_type_ids], outputs=output
    )

    model.compile(
        optimizer=tf.keras.optimizers.Adam(),
        loss="categorical_crossentropy",
        metrics=["acc"],
    )


print(f"Strategy: {strategy}")
model.summary()

train_data = BertSemanticDataGenerator(
    train_df[["sentence1", "sentence2"]].values.astype("str"),
    y_train,
    batch_size=batch_size,
    shuffle=True,
)
valid_data = BertSemanticDataGenerator(
    valid_df[["sentence1", "sentence2"]].values.astype("str"),
    y_val,
    batch_size=batch_size,
    shuffle=False,)

history = model.fit(
    train_data,
    validation_data=valid_data,
    epochs=epochs,
    use_multiprocessing=True,
    workers=-1,
)



# Unfreeze the bert_model.
bert_model.trainable = True

from keras import backend as K


def recall_m(y_true, y_pred):
    true_positives = K.sum(K.round(K.clip(y_true * y_pred, 0, 1)))
    possible_positives = K.sum(K.round(K.clip(y_true, 0, 1)))
    recall = true_positives / (possible_positives + K.epsilon())
    return recall

def precision_m(y_true, y_pred):
    true_positives = K.sum(K.round(K.clip(y_true * y_pred, 0, 1)))
    predicted_positives = K.sum(K.round(K.clip(y_pred, 0, 1)))
    precision = true_positives / (predicted_positives + K.epsilon())
    return precision

def f1_m(y_true, y_pred):
    precision = precision_m(y_true, y_pred)
    recall = recall_m(y_true, y_pred)
    return 2*((precision*recall)/(precision+recall+K.epsilon()))


# compile the model

# fit the model

# evaluate the model
# Recompile the model to make the change effective.
model.compile(
    optimizer=tf.keras.optimizers.Adam(1e-5),
    loss="categorical_crossentropy",
    metrics = ["accuracy", f1_m, precision_m, recall_m],
)

model.summary()

history = model.fit(
    train_data,
    validation_data=valid_data,
    epochs=epochs,
    use_multiprocessing=True,
    workers=-1,
)

test_data = BertSemanticDataGenerator(
    test_df[["sentence1", "sentence2"]].values.astype("str"),
    y_test,
    batch_size=batch_size,
    shuffle=False,
)
model.evaluate(test_data, verbose=1)


def check_similarity(sentence1, sentence2):
    sentence_pairs = np.array([[str(sentence1), str(sentence2)]])
    test_data = BertSemanticDataGenerator(
        sentence_pairs, labels=None, batch_size=1, shuffle=False, include_targets=False,
    )

    proba = model.predict(test_data)[0]
    idx = np.argmax(proba)
    proba = f"{proba[idx]: .2f}%"
    pred = labels[idx]
    return pred, proba
# checkpoint_path = "training_3/cp-{epoch:04d}.ckpt"
# checkpoint_dir = os.path.dirname(checkpoint_path)

batch_size = 32


# Create a callback that saves the model's weights every 5 epochs
# cp_callback = tf.keras.callbacks.ModelCheckpoint(
#     filepath=checkpoint_path,
#     verbose=1,
#     save_weights_only=True,
#     save_freq=5*batch_size)
#
# model.save_weights(checkpoint_path.format(epoch=0))
# model.save('saved_model1/my_model')
model.save('BERT_BiGRU(full).h5')