software.json

[
  {
    "name": "CCAFE",
    "description": "Case and control allele frequency estimation from GWAS summary statistics R package",
    "link": "https://github.com/wolffha/CCAFE"
  },
  {
    "name": "ReviewR",
    "description": "A Shiny tool for performing manual review of electronic medical records",
    "link": "https://reviewr.thewileylab.org/"
  },
  {
    "name": "summix",
    "description": "R package for estimating and leveraging substructure in genetic summary allele frequency data",
    "link": "https://bioconductor.org/packages/release/bioc/html/Summix.html"
  },
  {
    "name": "phoenix",
    "description": "Implementation of the Phoenix and Phoenix-8 Pediatric Sepsis and Septic Shock Criteria",
    "link": "https://cu-dbmi-peds.github.io/phoenix/"
  },
  {
    "name": "Clustermatch Correlation Coefficient",
    "description": "An efficient, not-only-linear correlation coefficient",
    "link": "https://github.com/pivlab/ccc"
  },
  {
    "name": "STew",
    "description": "R package for single-cell spatial transcriptomic data integration",
    "link": "https://github.com/fanzhanglab/STew"
  },
  {
    "name": "pedbp",
    "description": "R package for estimating pediatric blood pressure percentiles",
    "link": "https://github.com/dewittpe/pedbp"
  },
  {
    "name": "Monarch Initiative",
    "description": "Integrated cross-species gene, disease, and phenotype data",
    "link": "https://monarchinitiative.org"
  },
  {
    "name": "PyCytominer",
    "description": "Package for processing image-based profiling data",
    "link": "https://pycytominer.readthedocs.io"
  },
  {
    "name": "CytoSnake",
    "description": "Orchestrate single-cell morphology pipelines",
    "link": "https://cytosnake.readthedocs.io"
  },
  {
    "name": "CytoTable",
    "description": "Scalable single-cell data transformations",
    "link": "https://cytomining.github.io/CytoTable"
  },
  {
    "name": "Human Microbiome Compendium",
    "description": "Dataset of the human microbiome at an unprecedented scale",
    "link": "https://microbiomap.org"
  },
  {
    "name": "Simplex",
    "description": "Identify complexity in your scientific writing and simplify it",
    "link": "https://gosimplex.app"
  },
  {
    "name": "Lab Website Template",
    "description": "Easy-to-use, flexible website template for labs",
    "link": "https://greene-lab.gitbook.io/lab-website-template-docs"
  },
  {
    "name": "My Geneset",
    "description": "Collect, save, and share sets of genes",
    "link": "https://mygeneset.info"
  },
  {
    "name": "Word Lapse",
    "description": "Explore how words change meaning over time",
    "link": "https://greenelab.github.io/word-lapse"
  },
  {
    "name": "Preprint Similarity Search",
    "description": "Find suitable journals for a preprint based on its text",
    "link": "https://greenelab.github.io/preprint-similarity-search"
  },
  {
    "name": "Adage",
    "description": "Explore gene expression data with machine learning",
    "link": "https://adage.greenelab.com"
  },
  {
    "name": "Hetionet",
    "description": "29 databases of genes, compounds, diseases, and more in a single network",
    "link": "https://het.io"
  },
  {
    "name": "Manubot",
    "description": "Manuscripts, open and automated",
    "link": "https://manubot.org"
  }
]