pom.xml

<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
  xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
  <modelVersion>4.0.0</modelVersion>
 
  <artifactId>biosd_similarity_search</artifactId>
  <version>0.0.1-SNAPSHOT</version>
  <packaging>jar</packaging>

	<name>Similarity-based search against BioSD Linked Data</name>
  <url>http://github.com/CapStoneEBI2014/biosd_similarity_search</url>

	<!-- Common definitions, such as dependency versions and distribution repositories -->
	<parent>
	  <groupId>uk.ac.ebi.fg.biosd</groupId>
	  <artifactId>biosd_common</artifactId>
	  <version>1.1.1-SNAPSHOT</version>
	</parent>


  <properties>
  </properties>

  <dependencies>

		<!-- Common facade for logging -->
		<dependency>
			<groupId>org.slf4j</groupId>
			<artifactId>slf4j-api</artifactId>
		</dependency>

		<!-- Use Logback as concrete logger -->
		<dependency>
			<groupId>ch.qos.logback</groupId>
			<artifactId>logback-classic</artifactId>
		</dependency>

		<!-- Intercepts log4j and sends it to SL4J -->		
		<dependency>
			<groupId>org.slf4j</groupId>
			<artifactId>log4j-over-slf4j</artifactId>
		</dependency>
		
		<!-- Same for Java Common Logging -->
		<dependency>
		  <groupId>org.slf4j</groupId>
		  <artifactId>jcl-over-slf4j</artifactId>
		</dependency>


		<dependency>
	    <groupId>org.apache.jena</groupId>
	    <artifactId>jena-arq</artifactId>
	    <version>2.11.2</version>
	    <exclusions>
	    	<!-- We use our own logger (see above) -->
	    	<exclusion>
					<groupId>org.slf4j</groupId>
					<artifactId>slf4j-log4j12</artifactId>
	    	</exclusion>
	    </exclusions>
		</dependency>

		<!-- The web service client for the ZOOMA tool -->
		<dependency>
      <groupId>uk.ac.ebi.fgpt</groupId>
	    <artifactId>zooma-client</artifactId>
	    <version>2.0-SNAPSHOT</version>
	    <exclusions>
	    	<!-- We use our own logger (see above) -->
	    	<exclusion>
	    		<artifactId>slf4j-log4j12</artifactId>
	    		<groupId>org.slf4j</groupId>
	    	</exclusion>
	    </exclusions>
		</dependency>		




		<!-- TEST -->

	  <dependency>
	    <groupId>junit</groupId>
	    <artifactId>junit</artifactId>
	    <scope>test</scope>
	  </dependency>

		<dependency>
			<groupId>uk.ac.ebi</groupId>
			<artifactId>jutils</artifactId>
			<scope>test</scope>
		</dependency>


  </dependencies>

	<build>
	
		<finalName>${project.artifactId}_cli_${project.version}</finalName>
	
		<plugins>
		
			<!-- The package for line commands is built through this -->
	    <plugin>
        <artifactId>maven-assembly-plugin</artifactId>
        <executions>
          <execution>
            <id>deps</id>
            <configuration>
              <finalName>${project.artifactId}_deps</finalName>
              <appendAssemblyId>false</appendAssemblyId>
              <attach>false</attach>
              <descriptors>
              	<descriptor>src/main/assembly/deps.xml</descriptor>
              </descriptors>
            </configuration>
            <phase>package</phase>
            <goals>
              <goal>single</goal>
            </goals>
          </execution>
          <execution>
              <id>pkg</id>
              <configuration>
                  <finalName>${project.artifactId}_cli_${project.version}</finalName>
                  <appendAssemblyId>false</appendAssemblyId>
                  <attach>false</attach>
                  <descriptors>
                      <descriptor>src/main/assembly/pkg.xml</descriptor>
                  </descriptors>
              </configuration>
              <phase>package</phase>
              <goals>
              	<goal>single</goal>
              </goals>
          </execution>
        </executions>
	    </plugin>		
		
		</plugins>
	
    <testResources>
	    <testResource>
	      <directory>src/test/resources</directory>
	      <filtering>true</filtering>
	    </testResource>
    </testResources>
			
	</build>
	
	<scm>
		<developerConnection>https://github.com/CapStoneEBI2014/biosd_similarity_search.git</developerConnection>
	</scm>	
	
	
  <repositories>
  
	  <repository>
	    <id>ebi-repo</id>
	    <name>EBI repo</name>
	    <url>http://www.ebi.ac.uk/~maven/m2repo</url>
	  </repository>
	  
	  <repository>
	    <id>ebi-repo-snapshots</id>
	    <name>EBI Repo Snapshots</name>
	    <url>http://www.ebi.ac.uk/~maven/m2repo_snapshots</url>
	    <snapshots><enabled>true</enabled></snapshots>
	  </repository>
	  
  </repositories>

</project>