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main.py
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main.py
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# Import required libraries
from threading import Thread
import dash
import dash_bootstrap_components as dbc
import dash_core_components as dcc
import dash_html_components as html
import dash_table
from dash.dependencies import Input, Output, State, ClientsideFunction
from dash.exceptions import PreventUpdate
from functools import partial
import pandas as pd
import flask
from flask import render_template, redirect, send_from_directory, request
from api import init_api
import copy
import json
from datetime import datetime as dt
import datetime
import os
import uuid
import sys
# import uwsgidecorators
import time
from urllib.parse import urlparse, parse_qs
import plotly.express as px
import plotly.graph_objects as go
# sys.stderr = open('err.txt', 'w')
PORT = 8899
# Developing: DEBUG = True
# Production: DEBUG = False
DEBUG = True
## Add convida lib and convida server lib to path
convida_lib_path = os.getcwd()
lib = os.path.join(convida_lib_path, 'COnVIDa-lib')
lib_aux = os.path.join(lib, 'lib')
sys.path.append(lib_aux)
convida_server_path = os.getcwd()
server_path = os.path.join(convida_server_path, 'COnVIDa-lib')
server_aux = os.path.join(server_path, 'server')
sys.path.append(server_aux)
from convida import COnVIDa
from regions import Regions
from datatype import DataType
from convida_server import convida_server
convida_server.init_log()
convida_server.load_data()
FOLDER_LOGS = os.path.join(os.getcwd(), 'log')
try:
LAST_UPDATE = open(os.path.join(FOLDER_LOGS, 'update.txt'), "r").readline()
except:
LAST_UPDATE = 'undefinied'
TIME_UPDATE = datetime.time(2, 00, 00)
TIME_UPDATE_D = datetime.timedelta(hours=TIME_UPDATE.hour, minutes=TIME_UPDATE.minute, seconds=TIME_UPDATE.second)
if not DEBUG:
@uwsgidecorators.postfork
@uwsgidecorators.thread
def daily_update():
print("Starting Thread...")
while True:
time_now = dt.now()
time_now_d = datetime.timedelta(hours=time_now.hour, minutes=time_now.minute, seconds=time_now.second)
time_left = TIME_UPDATE_D - time_now_d
print("Time left to run daily_update: {} seconds".format(time_left.seconds))
time.sleep(time_left.seconds)
nAttemps = 0 # 3 attemps
try:
while ((not convida_server.daily_update()) and (nAttemps < 3)):
nAttemps += 1
time.sleep(240)
if (nAttemps < 3):
f = open(os.path.join(FOLDER_LOGS, 'update.txt'), "w")
last_update = dt.now().strftime('%d-%m-%Y, %H:%M (GMT+1)')
f.write("{}".format(last_update))
f.close()
except:
print("Thread Critical Error")
PATH = os.path.dirname(os.path.abspath(__file__))
with open(PATH + '/assets/convida_dict.json', encoding='utf8') as json_file:
convida_dict = json.load(json_file)
app = flask.Flask(__name__, template_folder="assets")
dash_app = dash.Dash(
__name__, server=app, url_base_pathname='/',
meta_tags=[
{"name": "viewport", "content": "width=device-width"},
{"name": "description", "content": convida_dict.get('description').get('ES')},
{"name": "title", "content": "COnVIDa - {}".format(convida_dict.get('title').get('ES'))},
{"name": "keywords", "content": convida_dict.get('keywords').get('ES')},
{"name": "robots", "content": "index, follow"},
{"name": "googlebot", "content": "index, follow"},
{"name": "bingbot", "content": "index, follow"},
{"property": "og:title", "content": "COnVIDa - {}".format(convida_dict.get('title').get('ES'))},
{"property": "og:description", "content": convida_dict.get('description').get('ES')},
{"property": "og:image", "content": "https://convida.inf.um.es/assets/img/convida-og.png"},
{"property": "og:image:secure_url", "content": "https://convida.inf.um.es/assets/img/convida-og.png"},
{"property": "og:image:type", "content": "image/png"},
{"property": "og:image:width", "content": "666"},
{"property": "og:image:height", "content": "666"},
{"property": "og:url", "content": "https://convida.inf.um.es"},
{"property": "og:type", "content": "website"},
{"property": "og:updated_time", "content": "1440432930"},
{"property": "og:site_name", "content": "COnVIDa"},
{"property": "og:locale", "content": "es_ES"},
]
)
dash_app.scripts.config.serve_locally = False
dash_app.scripts.append_script({
'external_url': 'https://www.googletagmanager.com/gtag/js?id=UA-166292510-1'
})
init_api(app)
@app.route('/help')
def help_en():
return render_template("help.html")
@app.route('/ayuda')
def help_es():
return render_template("ayuda.html")
# An array of dictionaries with the keys 'label' and 'value',
# to be used as the options for the dropdown of Regions
regions_options = [
{"label": str(region), "value": str(region)}
for region in Regions.get_regions_by_type('c', 'ES')
]
regions_map_names = [i['value'] for i in regions_options]
with open(PATH + '/assets/maps/spain-communities.json', encoding='utf8') as json_file:
region_map = json.load(json_file)
df_region = pd.DataFrame(regions_map_names, columns=['name'])
df_region['name_length'] = df_region['name'].str.len()
province_options = [
{"label": str(region), "value": str(region)}
for region in Regions.get_regions_by_type('p', 'ES')
]
prov_map_names = [i['value'] for i in province_options]
with open(PATH + '/assets/maps/spain-provinces.json', encoding='utf8') as json_file:
province_map = json.load(json_file)
df_prov = pd.DataFrame(prov_map_names, columns=['name'])
df_prov['name_length'] = 0
df_prov['name'] = df_prov['name'].replace({'Santa Cruz de Tenerife': "Tenerife"})
with open(PATH + '/assets/maps/europe.json', encoding='utf8') as json_file:
europe_map = json.load(json_file)
# Default layout for an empty graph
empty_graph_layout = dict(
autosize=True,
automargin=True,
margin=dict(l=30, r=30, b=20, t=40),
hovermode="closest",
plot_bgcolor="#F9F9F9",
paper_bgcolor="#F9F9F9",
legend=dict(font=dict(size=10), orientation="h", y=-0.2),
yaxis=dict(
type='linear'
),
xasis=dict(
tickformat='digits'
),
)
# Default annotation for an empty graph
empty_graph_annotation = dict(
text=convida_dict.get('no_regions_selected_label').get('ES'),
x=0.5,
y=0.5,
align="center",
showarrow=False,
xref="paper",
yref="paper",
)
def get_data_source_dropdown_options(dataSource, dataType, language):
"""Creates and returns the dropdown options for each data source.
The dropdown options include the label, the value and the title
for each dropdown item.
Parameters
----------
dataSource : str
The name of the data source (e.g., 'COVID19', 'Mobility', etc.)
dataType : DataType
The data type for the specified data source, either TEMPORAL or GEOGRAPHICAL
language : str
The language to be used (e.g., 'ES' or 'EN')
Returns
-------
dict array
an array of dictionaries with the keys 'label', 'value', 'disabled' and 'title'
"""
data_items_names = COnVIDa.get_data_items_names(dataType, language=language)
data_items_descriptions = COnVIDa.get_data_items_descriptions(dataType, language=language)
data_items_units = COnVIDa.get_data_items_units(dataType, language=language)
data_source_data_items_names = data_items_names.get(dataSource + 'DataSource')
data_source_data_items_descriptions = data_items_descriptions.get(dataSource + 'DataSource')
data_source_data_items_units = data_items_units.get(dataSource + 'DataSource')
data_source_options = [
{"label": str(data_item_name), "value": str(data_item_name),
"disabled": False, "title": str(data_item_description) + " [" + data_item_unit + "]"}
for data_item_name, data_item_description, data_item_unit in
zip(data_source_data_items_names, data_source_data_items_descriptions, data_source_data_items_units)
]
return data_source_options
def generate_header(language):
"""Creates and returns the HTML code for the header of the dashboard
Parameters
----------
language : str
The language to be used (e.g., 'ES' or 'EN')
Returns
-------
html
HTML code for the header of the dashboard including COnVIDa logo,
title and UMU logo
"""
return html.Div(
[
html.Div(
[
html.A(
[
html.Img(
src=dash_app.get_asset_url("img/convida-logo.png"),
id="convida-logo",
style={"height": "70px"},
),
],
href="/" if language == 'ES' else "/en",
target="_self",
),
],
style={
"display": "block",
"text-align": "center",
},
className="one-third column",
),
html.Div(
[
html.H2(convida_dict.get('title').get(language)),
],
className="one-half column",
id="title",
),
html.Div(
[
html.A(
[
html.Img(
src=dash_app.get_asset_url("img/cyberdatalab-logo.png"),
id="cyberdatalab-logo",
style={"height": "60px"},
),
],
href="https://cyberdatalab.um.es/",
target="_blank",
style={"margin-right": "10px"},
id='cyberdatalab-a'
),
html.A(
[
html.Img(
src=dash_app.get_asset_url("img/umu-logo.png"),
id="umu-logo",
style={"height": "60px"},
),
],
href="https://www.um.es",
target="_blank",
style={"margin-left": "10px"},
id='umu-a'
),
],
style={
"display": "block",
"text-align": "center",
},
className="one-third column",
id="cyber-umu-logos"
),
],
id="header",
className="row flex-display",
)
def generate_language_bar(language):
"""Creates and returns the HTML code for the languages bar of the dashboard
Parameters
----------
language : str
The language to be used (e.g., 'ES' or 'EN')
Returns
-------
html
HTML code for the languages bar of the dashboard including language
flags (Spanish and English), help icon and source code icon
"""
return html.Div(
[
html.A(
html.Img(
src=dash_app.get_asset_url("img/source-code.png"),
className="help_button",
),
href="https://github.com/CyberDataLab/COnVIDa",
target="_blank",
title=convida_dict.get('source_code').get(language),
),
html.A(
html.Img(
src=dash_app.get_asset_url("img/help.svg"),
className="help_button",
),
href="/ayuda" if language == 'ES' else "/help",
title=convida_dict.get('help_label').get(language),
),
html.Img(
src=dash_app.get_asset_url("img/en-flag.png"),
id="en-lang",
n_clicks=0,
className="lang_button",
title=convida_dict.get('english').get(language),
),
html.Img(
src=dash_app.get_asset_url("img/es-flag.png"),
id="es-lang",
n_clicks=0,
className="lang_button",
title=convida_dict.get('spanish').get(language),
),
html.Div(
[
html.H6(convida_dict.get('last_update').get(language) + LAST_UPDATE),
],
id="last_update",
),
],
id="languages-bar",
className="row flex-display",
style={
"display": "block",
},
)
def generate_data_retrieval_settings_panel(dropdown_options, language):
"""Creates and returns the HTML code for the data retrieval settings
panel of the dashboard.
Parameters
----------
dropdown_options : dict
A dictionary with the dropdown options for each data source
language : str
The language to be used (e.g., 'ES' or 'EN')
Returns
-------
html
HTML code for the data retrieval settings panel of the dashboard
including dates picker, regions selection and data sources selection
"""
return html.Div(
[
html.Div([
html.Div(
[
html.H6(convida_dict.get('date_range_label').get(language), className="control_label"),
dcc.DatePickerRange(
id='date-picker-range',
first_day_of_week=1,
day_size=43,
display_format='DD/MM/YYYY',
start_date=str(dt(2020, 2, 21))[0:10],
end_date=convida_server.get_max_date(),
min_date_allowed=convida_server.get_min_date(),
max_date_allowed=convida_server.get_max_date(),
),
],
className="data-retrieval-settings-container three columns",
),
html.Div(
[
html.H6(convida_dict.get('regions_label').get(language), className="control_label"),
html.Div(
[
html.Button(convida_dict.get('select_all_label').get(language),
id="select_all_regions_button",
n_clicks=0,
className="select-all-button",
),
dcc.Checklist(
options=[
{'label': convida_dict.get('select_spain').get(language), 'value': 'España'},
],
id="select_spain",
)
],
className='data-retrieval-settings-spain'
),
dcc.Dropdown(
id="selected_regions",
options=regions_options,
multi=True,
className="dcc_control",
placeholder=convida_dict.get('select_label').get(language)
),
],
className="data-retrieval-settings-container three columns",
),
html.Div(
[
html.H6(convida_dict.get('provinces_label').get(language), className="control_label"),
html.Button(convida_dict.get('select_all_label').get(language),
id="select_all_provinces_button",
n_clicks=0,
className="select-all-button",
),
dcc.Dropdown(
id="selected_provinces",
options=province_options,
multi=True,
className="dcc_control",
placeholder=convida_dict.get('select_label').get(language)
),
],
className="data-retrieval-settings-container three columns",
),
html.Div(
[
html.H6([
html.Img(src=dash_app.get_asset_url("img/covid19-icon.svg"),
className="data-source-icon"),
convida_dict.get('covid19_data_label').get(language),
], className="control_label"),
html.Button(convida_dict.get('select_all_label').get(language),
id="select_all_covid19_button",
n_clicks=0,
className="select-all-button",
),
dcc.Dropdown(
id="selected_covid19",
options=dropdown_options['COVID19'],
multi=True,
className="dcc_control",
placeholder=convida_dict.get('select_label').get(language)
),
],
className="data-source-container three columns",
),
html.Div(
[
dcc.Checklist(
options=[
{'label': 'INE', 'value': 'ine'},
{'label': convida_dict.get('mobility').get(language), 'value': 'mobility'},
{'label': 'MoMo', 'value': 'momo'},
{'label': 'AEMET', 'value': 'aemet'},
],
id="further-data-sources",
),
],
className='data-retrieval-settings-container one columns',
),
],
),
html.Div([
html.Div(
[
html.H6([
html.Img(src=dash_app.get_asset_url("img/ine-icon.svg"),
className="data-source-icon"),
convida_dict.get('ine_data_label').get(language),
], className="control_label"),
html.Button(convida_dict.get('select_all_label').get(language),
id="select_all_ine_button",
n_clicks=0,
className="select-all-button",
),
dcc.Dropdown(
id="selected_ine",
options=dropdown_options['INE'],
multi=True,
className="dcc_control",
placeholder=convida_dict.get('select_label').get(language)
),
],
className="data-source-container three columns",
id="ine-data-source-container",
style={"display": "none"},
),
html.Div(
[
html.H6([
html.Img(src=dash_app.get_asset_url("img/mobility-icon.svg"),
className="data-source-icon"),
convida_dict.get('mobility_data_label').get(language),
], className="control_label"),
html.Button(convida_dict.get('select_all_label').get(language),
id="select_all_mobility_button",
n_clicks=0,
className="select-all-button",
),
dcc.Dropdown(
id="selected_mobility",
options=dropdown_options['Mobility'],
multi=True,
className="dcc_control",
placeholder=convida_dict.get('select_label').get(language)
),
],
className="data-source-container three columns",
id="mobility-data-source-container",
style={"display": "none"},
),
html.Div(
[
html.H6([
html.Img(src=dash_app.get_asset_url("img/momo-icon.svg"),
className="data-source-icon"),
convida_dict.get('momo_data_label').get(language),
], className="control_label"),
html.Button(convida_dict.get('select_all_label').get(language),
id="select_all_momo_button",
n_clicks=0,
className="select-all-button",
),
dcc.Dropdown(
id="selected_momo",
options=dropdown_options['MoMo'],
multi=True,
className="dcc_control",
placeholder=convida_dict.get('select_label').get(language)
),
],
className="data-source-container three columns",
id="momo-data-source-container",
style={"display": "none"},
),
html.Div(
[
html.H6([
html.Img(src=dash_app.get_asset_url("img/aemet-icon.svg"),
className="data-source-icon"),
convida_dict.get('aemet_data_label').get(language),
], className="control_label"),
html.Button(convida_dict.get('select_all_label').get(language),
id="select_all_aemet_button",
n_clicks=0,
className="select-all-button",
),
dcc.Dropdown(
id="selected_aemet",
options=dropdown_options['AEMET'],
multi=True,
className="dcc_control",
placeholder=convida_dict.get('select_label').get(language)
),
],
className="data-source-container three columns",
id="aemet-data-source-container",
style={"display": "none"},
),
],
id="further_data_sources_container",
),
html.Div([
html.Img(
src=dash_app.get_asset_url("img/share.png"),
id="share_button",
n_clicks=0,
className="help_button",
title=convida_dict.get('share').get(language),
),
html.Div(
id="share_bar",
style={"float": "right"}
),
],
id="share_container",
),
],
className="pretty_container",
id="data-retrieval-settings-panel",
style={"display": "grid"},
)
def generate_modal_window(id, language):
"""Creates and returns the HTML code for the modal window to download
the queried data.
Parameters
----------
id : str
Identifier of the modal window to be created
language : str
The language to be used (e.g., 'ES' or 'EN')
Returns
-------
html
HTML code for the modal window to download the queried data
including download buttons for several file types
"""
return dbc.Modal(
[
dbc.ModalHeader(convida_dict.get('select_data_format_label').get(language)),
dbc.ModalBody(
html.Div(
id="download-area-{}".format(id),
className="block container-display",
children=[]
)
),
dbc.ModalFooter(
dbc.Button(convida_dict.get('close').get(language), id="close-{}".format(id), className="ml-auto",
style={"width": "20%"})
),
],
id=id,
)
def generate_graph_container(language, graph_type):
"""Creates and returns the HTML code for the graph container
of the dashboard.
Parameters
----------
language : str
The language to be used (e.g., 'ES' or 'EN')
graph_type : str
The type of graph to be generated (e.g., 'temporal' or 'regional')
Returns
-------
html
HTML code for the graph container of the dashboard
including the loading wheel functionality
"""
return html.Div(
[
dcc.Loading(
[
dcc.Graph(
id="{}_graph".format(graph_type),
config={
"locale": "es" if language == 'ES' else "en-US",
"displaylogo": False,
},
figure={
"layout": empty_graph_layout,
},
style={
'height': 800
},
responsive=True
)
],
type="circle",
)
],
id="{}-graph-container".format(graph_type),
className="pretty_container",
)
def generate_graph_container_with_map(language, graph_type):
"""Creates and returns the HTML code for the graph container
of the dashboard.
Parameters
----------
language : str
The language to be used (e.g., 'ES' or 'EN')
graph_type : str
The type of graph to be generated (e.g., 'temporal' or 'regional')
Returns
-------
html
HTML code for the graph container of the dashboard
including the loading wheel functionality
"""
return html.Div([
html.Div(
[
dcc.Loading(
[
dcc.Graph(
id="{}_graph".format(graph_type),
config={
"locale": "es" if language == 'ES' else "en-US",
"displaylogo": False,
},
figure={
"layout": empty_graph_layout,
},
style={
'height': 980,
},
responsive=True
),
],
type="circle",
),
html.Div(
[
html.Div([
html.H6(convida_dict.get('plot_scale_label').get(language) + ':',
className="control_label"),
dcc.RadioItems(
id="{}_selected_plot_scale".format(graph_type),
value="Linear",
options=[
{"label": convida_dict.get('plot_scale_linear_label').get(language),
"value": "Linear"},
{"label": convida_dict.get('plot_scale_log_label').get(language),
"value": "Log"},
],
labelStyle={"display": "inline-block"},
style={'padding': '10px 10px 0px 10px', 'width': 'auto'},
className="dcc_control",
),
],
style={"display": "flex"}
)
],
id="graph-settings-container-{}-left".format(graph_type),
className="pretty_container_regional",
),
],
id="{}-graph-container".format(graph_type),
className="pretty_container graph",
),
html.Div(
[
dcc.Loading(
[
dcc.Graph(
id="map",
style={
'height': 800,
'width': '100%',
},
),
],
type="circle",
),
html.Div(
[
html.Div([
html.H6(convida_dict.get('filter_label').get(language),
className="control_label"),
dcc.RadioItems(
id='region_type',
value="region",
options=[
{'value': "spain", 'label': convida_dict.get('spain_label').get(language)},
{'value': "region", 'label': convida_dict.get('regions_label').get(language)},
{'value': "prov", 'label': convida_dict.get('provinces_label').get(language)}
],
labelStyle={'display': 'inline-block'},
style={'padding': '10px 10px 0px 10px'}
),
],
style={'display': 'flex'}
),
html.Div([
html.H6(convida_dict.get('measure_label').get(language),
className="control_label"),
dcc.RadioItems(
id='measure_type',
value="mean",
options=[
{'value': "mean", 'label': convida_dict.get('mean_label').get(language)},
{'value': "max", 'label': convida_dict.get('max_label').get(language)},
{'value': "min", 'label': convida_dict.get('min_label').get(language)},
{'value': "25%", 'label': convida_dict.get('q1_label').get(language)},
{'value': "50%", 'label': convida_dict.get('median_label').get(language)},
{'value': "75%", 'label': convida_dict.get('q3_label').get(language)}
],
labelStyle={'display': 'inline-block'},
style={'padding': '10px 10px 0px 10px'}
),
],
style={'display': 'flex'}
),
dcc.Dropdown(
id="dataitems_map",
multi=False,
className="dcc_control",
placeholder=convida_dict.get('map_dataitems_label').get(language)
),
dcc.Dropdown(
id="dataitems_map_ine",
multi=False,
className="dcc_control",
placeholder=convida_dict.get('select_type_dataitem').get(language),
style={'display': 'none'}
),
],
id="graph-settings-container-{}-right".format(graph_type),
className="pretty_container_regional",
),
],
id="{}-map-container".format(graph_type),
className="pretty_container map",
)
],
id="{}-wrap-container".format(graph_type),
style={"display": "flex"})
def generate_graph_settings_container(language, graph_type):
"""Creates and returns the HTML code for the graph settings
container of the dashboard.
Parameters
----------
language : str
The language to be used (e.g., 'ES' or 'EN')
graph_type : str
The type of graph whose settings are to be generated
(e.g., 'temporal' or 'regional')
Returns
-------
html
HTML code for the graph settings container of the dashboard
including the type of graph (lines or bars) and the plot
scale (linear or logarithmic).
"""
return html.Div(
[
html.Div(
[
html.H6(convida_dict.get('graph_type_label').get(language),
className="control_label"),
dcc.Dropdown(
id="{}_selected_graph_type".format(graph_type),
options=[
{"label": convida_dict.get('lines_graph_type_label').get(language),
"value": "lines"},
{"label": convida_dict.get('bars_graph_type_label').get(language),
"value": "bars"},
],
multi=False,
value='lines',
clearable=False,
className="dcc_control",
searchable=False
),
],
style={"width": "100%"} if graph_type == "temporal" else {'display': 'none'},
),
html.Div(
[
html.H6(convida_dict.get('plot_scale_label').get(language),
className="control_label"),
dcc.RadioItems(
id="{}_selected_plot_scale".format(graph_type),
value="Linear",
options=[
{"label": convida_dict.get('plot_scale_linear_label').get(language),
"value": "Linear"},
{"label": convida_dict.get('plot_scale_log_label').get(language),
"value": "Log"},
],
labelStyle={"display": "inline-block"},
className="dcc_control",
),
],
style={"width": "100%"},
),
],
id="graph-settings-container-{}".format(graph_type),
className="pretty_container",
style={"display": "flex"},
)
def generate_table_container(language, table_type):
"""Creates and returns the HTML code for the table
container of the dashboard.
Parameters
----------
language : str
The language to be used (e.g., 'ES' or 'EN')
table_type : str
The type of table to be generated (e.g., 'temporal' or 'regional')
Returns
-------
html
HTML code for the table container of the dashboard
including the summary table itself, the downloading
buttons (for raw data and summary), as well as a
legend.
"""
return html.Div([
html.H6([
convida_dict.get('summary_table_label').get(language),
html.Img(src=dash_app.get_asset_url("img/eye-ena.svg"),
className="eye-icon",
id="summary-eye-icon",
title=convida_dict.get('eye').get(language)),
],
className="control_label",
style={"padding-bottom": "5px",
"font-size": "1.8rem"},
),
html.Div(
[
html.Div(
[html.H6(convida_dict.get('summary_table_label').get(language),
className="control_label")]
),
html.Div(
[],
id="summary-table",
style={"display": "flex"},
),
html.Div(
[
html.Div(
[
dbc.Button(convida_dict.get('save_raw_data_label').get(language),
id="temporal-save-raw-data-button",
className="button",
style={"margin-bottom": "20px"},
n_clicks=0),
dbc.Button(convida_dict.get('save_summary_data_label').get(language),
id="temporal-save-summary-table-button",
className="button",
n_clicks=0),
],
className="one-half column save-buttons",
style={"text-align": "center"},
),
html.Div(
[
html.Div(
[
html.H6(convida_dict.get('legend').get(language),
className="control_label"),
html.Div(
[html.Strong("count: "), convida_dict.get('count-meaning').get(language)],
),
html.Div(
[html.Strong(html.A("mean",
href=convida_dict.get('mean-wiki-link').get(language),