From 06400d7aca7b6cfcb344c975725bf21fd7a471cb Mon Sep 17 00:00:00 2001
From: Peter Vegh <pvegh@posteo.uk>
Date: Tue, 10 Dec 2024 16:36:58 +0000
Subject: [PATCH] Fail sample for small errors

---
 ediacara/Comparator.py | 5 +++++
 1 file changed, 5 insertions(+)

diff --git a/ediacara/Comparator.py b/ediacara/Comparator.py
index e8ffb9c..16bd76c 100644
--- a/ediacara/Comparator.py
+++ b/ediacara/Comparator.py
@@ -729,6 +729,11 @@ def perform_comparison(self, assembly_path=None, vcf_path=None):
             self.vcf_table = self.create_vcf_table(vcf_path=vcf_path)
         # plt.close("all")
 
+        # Any error should fail the sample:
+        if self.vcf_table["T"].sum() > 0:
+            self.has_errors = True
+            self.has_small_diff = True
+
         # Prepare error text:
         # This has to be defined after all checks performed:
         self.error_dict = {