From 19ae9d8289e7ab1d2a86d5d5cb8be862115ba819 Mon Sep 17 00:00:00 2001 From: Chris Mungall Date: Thu, 30 May 2024 19:27:50 -0700 Subject: [PATCH] Adding link to ontogenesis chapter on annotations. (#771) * Adding link to ontogenesis chapter on annotations. See also https://github.com/OBOAcademy/obook/issues/500 * fix codespell. See #756 --- docs/guide/associations.rst | 2 +- pyproject.toml | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/docs/guide/associations.rst b/docs/guide/associations.rst index 270b8ce4c..e8031b24e 100644 --- a/docs/guide/associations.rst +++ b/docs/guide/associations.rst @@ -82,9 +82,9 @@ or any is-a :term:`Descendant`: runoak -i sqlite:obo:hp -G hpoa -g phenotype.hpoa associations -p i HP:0011482 - Further reading --------------- +- `Ontogenesis article on associations `_ - `Gene Ontology: tool for the unification of biology `_ - `On beyond Gruber: "Ontologies" in today's biomedical information systems and the limits of OWL `_. diff --git a/pyproject.toml b/pyproject.toml index c59c8cd83..3e7dadd55 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -93,7 +93,7 @@ reverse_relative = true [tool.codespell] skip = '.git,*.pdf,*.svg,poetry.lock,*.obo,*.ttl,*.ofn,*.gaf,*.tsv,*.json,input' ignore-regex = '(^\s*"image/\S+": ".*|[a-z]*\.\.\.)' -ignore-words-list = 'ptd,ot,nd,ser,oger,gard,te,fo,fof,bu,ue,ois,processus,infarction,infarctions' +ignore-words-list = 'ptd,ot,nd,ser,oger,gard,te,fo,fof,bu,ue,ois,processus,infarction,infarctions,assertIn,morpholgy' [tool.ruff] lint.extend-ignore = [