splice-variants.md

Splice variants

Definitions of splice variants.

PB1-F2

nt 95-367 of IRMA reference PB1 sequence.

Translation: MEQEQDTPWTQSTEHTNIQKRGSGQQTQRLEHPNSTQLMDHYLRIMSQVDMHKQTVSWKQWLSLKNPTQESLKTHVLKRWKLFNKQEWTN.

PA-X

nt 1-760 of IRMA reference PA sequence (replacing "TCCTTTCGTCAG" with "TCCTTCGTCAG").

Translation: MEDFVRQCFNPMIVELAEKAMKEYGEDPKIETNKFAAICTHLEVCFMYSDFHFIDERGESIIVESGDPNALLKHRFEIIEGRDRTMAWTVVNSICNTTGVEKPKFLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSEKTHIHIFSFTGEEMATKADYTLDEESRARIKTRLFTIRQEMASRGLWDSFVSPKEAKRQLKKDLKSQEPCAGLPTKVSHRTSPALKTLEPMWMDSNRTAALRASFLKCQKK.

M2

nt 1-26 + nt 715-982 of IRMA reference MP

Translation: MSLLTEVETPTRNEWECRCSDSSDPLVVAASIIGILHLILWILDRLFFKCIYRRFKYGLKRGPSTEGVPESMREEYRQEQQSAVDVDDGHFVNIELE.

NS2

nt 1-30 + 503-838 of NS IRMA reference MP

Translation: MDSNTVSSFQDILMRMSKMQLGSSSEDLNGMITQFESLKIYRDSLGEAVMRMGDLHSLQSRNGKWREQLSQKFEEIRWLIEEVRHRLKITENSFEQITFMQALQLLLEVEQEIRTFSFQLI.