diff --git a/docs/build/doctrees/environment.pickle b/docs/build/doctrees/environment.pickle
index fef9966..f0112b0 100644
Binary files a/docs/build/doctrees/environment.pickle and b/docs/build/doctrees/environment.pickle differ
diff --git a/docs/build/doctrees/index.doctree b/docs/build/doctrees/index.doctree
index 6883569..3b22551 100644
Binary files a/docs/build/doctrees/index.doctree and b/docs/build/doctrees/index.doctree differ
diff --git a/docs/build/html/_sources/index.rst.txt b/docs/build/html/_sources/index.rst.txt
index c439521..3ad20cb 100644
--- a/docs/build/html/_sources/index.rst.txt
+++ b/docs/build/html/_sources/index.rst.txt
@@ -7,9 +7,6 @@ Welcome to WalshPulSeqProtocol's documentation!
 ===============================================
 
 .. include:: ../README.md
-   :parser: myst_parser.sphinx_
-   :start-after: <!-- index.rst content start -->
-
 
 .. toctree::
    :maxdepth: 2
diff --git a/docs/source/.ipynb_checkpoints/conf-checkpoint.py b/docs/source/.ipynb_checkpoints/conf-checkpoint.py
index 0ae70f8..14525bc 100644
--- a/docs/source/.ipynb_checkpoints/conf-checkpoint.py
+++ b/docs/source/.ipynb_checkpoints/conf-checkpoint.py
@@ -61,6 +61,11 @@
     # "sphinx_wagtail_theme",
 ]
 
+source_suffix = {
+    '.rst': 'restructuredtext',
+    '.md': 'markdown',
+}
+
 # Add any paths that contain templates here, relative to this directory.
 templates_path = ['_templates']
 
diff --git a/docs/source/.ipynb_checkpoints/index-checkpoint.rst b/docs/source/.ipynb_checkpoints/index-checkpoint.rst
index c439521..3ad20cb 100644
--- a/docs/source/.ipynb_checkpoints/index-checkpoint.rst
+++ b/docs/source/.ipynb_checkpoints/index-checkpoint.rst
@@ -7,9 +7,6 @@ Welcome to WalshPulSeqProtocol's documentation!
 ===============================================
 
 .. include:: ../README.md
-   :parser: myst_parser.sphinx_
-   :start-after: <!-- index.rst content start -->
-
 
 .. toctree::
    :maxdepth: 2
diff --git a/docs/source/conf.py b/docs/source/conf.py
index 0ae70f8..14525bc 100644
--- a/docs/source/conf.py
+++ b/docs/source/conf.py
@@ -61,6 +61,11 @@
     # "sphinx_wagtail_theme",
 ]
 
+source_suffix = {
+    '.rst': 'restructuredtext',
+    '.md': 'markdown',
+}
+
 # Add any paths that contain templates here, relative to this directory.
 templates_path = ['_templates']
 
diff --git a/docs/source/index.rst b/docs/source/index.rst
index c439521..3ad20cb 100644
--- a/docs/source/index.rst
+++ b/docs/source/index.rst
@@ -7,9 +7,6 @@ Welcome to WalshPulSeqProtocol's documentation!
 ===============================================
 
 .. include:: ../README.md
-   :parser: myst_parser.sphinx_
-   :start-after: <!-- index.rst content start -->
-
 
 .. toctree::
    :maxdepth: 2