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annotation version / genome #1

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kasperdanielhansen opened this issue Aug 17, 2020 · 1 comment
Open

annotation version / genome #1

kasperdanielhansen opened this issue Aug 17, 2020 · 1 comment
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enhancement New feature or request
Milestone
bioc v3.20

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@kasperdanielhansen
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Currently, seqinfo is empty. It should be populated based on the genome we use.

Is there a way to store the annotation (ie. gencode) inside the object? Not sure how, perhaps look at the txmeta package. This would be great to be able to do.
@kasperdanielhansen
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Likewise some link to the annotation. Columns of the rowRanges are basically given by the annotation source and it would be good to have some link to the documentation, for example, what does the tag column specify (no need to explain).

@lcolladotor lcolladotor added the enhancement New feature or request label Nov 30, 2023
@lcolladotor lcolladotor moved this to Todo in recount3 plans Nov 30, 2023
@lcolladotor lcolladotor added this to the bioc v3.20 milestone Nov 30, 2023
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enhancement New feature or request
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recount3 plans
Status: Todo
Milestone
bioc v3.20
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@lcolladotor @kasperdanielhansen