.travis.yml

language: r
r: bioc-devel
sudo: false
cache:
  packages: true
warnings_are_errors: true

## cache apt packages
addons: 
  apt: 
    packages: 
      - libnetcdf-dev
      - netcdf-bin
      - libhdf5-dev
      - libgit2-dev
      - texlive-latex-recommended
      - texlive-fonts-extra
jobs: 
  include: 
    - stage: "Build" 
      r_packages:
        - covr
        - knitr
        - roxygen2
        - testthat
      r_github_packages:
        - jimhester/lintr
      before_install: 
        - mkdir -p ~/.R 
        - echo -e 'MAKEFLAGS = -j2' > ~/.R/Makevars
        - echo 'options(Ncpus = 2)' > ~/.Rprofile
        - echo 'options(repos = c(CRAN = "https://cran.rstudio.com"))' > ~/.Rprofile
        - echo 'utils::chooseCRANmirror(ind = 1)' > ~/.Rprofile
      script: true
      name: "Build dependencies and cache" 
    - stage: "Check" 
      r_build_args: --no-build-vignettes --no-manual
      r_check_args: --as-cran --no-build-vignettes --no-vignettes --no-manual --no-tests
      before_script: rm -rf vignettes
      install: skip
      name: "examples"
    - install: skip
      script: 
        - travis_wait 10 R CMD build --no-build-vignettes --no-manual .
        - travis_wait 40 R CMD check --as-cran --no-build-vignettes --no-vignettes --no-manual --no-codoc --no-examples MetCirc*tar.gz
      before_script: rm -rf vignettes
      name: "tests"
    - stage: "CodeCov"
      install: skip
      script:
        - travis_wait 20 Rscript -e 'covr::codecov()'
      name: "codecov"
      on:
        branch: master
    - stage: "lintr" 
      install: skip
      script:
        - travis_wait 20 Rscript -e 'lintr::lint_package()'
      name: "lintr"
      on: 
        branch: "master"


## In general the r-travis script automatically dump the logs after failure but
## because of a bug in travis the output is often truncated. See
## https://github.com/travis-ci/travis-ci/issues/6018
after_failure: sleep 10


notifications:
  email:
    recipients: thomasnaake@gmail.com
    on_success: change
    on_failure: change