DESCRIPTION

Package: MetCirc
Type: Package
Title: Navigating mass spectral similarity in high-resolution MS/MS 
    metabolomics data
Version: 1.17.0
Date: 2019-10-21
Authors@R: c(person(given = "Thomas", family = "Naake",
    email = "thomasnaake@googlemail.com",
    role = c("aut","cre")),
  person(given = "Emmanuel", family = "Gaquerel",
    email = "emmanuel.gaquerel@ibmp-cnrs.unistra.fr", role = "aut"))
Author: Thomas Naake <thomasnaake@googlemail.com> and Emmanuel Gaquerel
    <emmanuel.gaquerel@ibmp-cnrs.unistra.fr>
Maintainer: Thomas Naake <thomasnaake@googlemail.com>
VignetteBuilder: knitr
Depends:
    R (>= 3.5),
    amap (>= 0.8),
    circlize (>= 0.3.9),
    scales (>= 0.3.0),
    shiny (>= 1.0.0),
    MSnbase (>= 2.10.1),
Imports:
    ggplot2 (>= 3.2.1),
    S4Vectors (>= 0.22.0)    
Suggests:
    BiocGenerics,
    graphics (>= 3.5),
    grDevices (>= 3.5),
    knitr (>= 1.11),
    methods (>= 3.5),
    stats (>= 3.5),
    testthat (>= 2.2.1)
biocViews: ImmunoOncology, Metabolomics, MassSpectrometry, Visualization
Description: MetCirc comprises a workflow to interactively explore 
  high-resolution MS/MS metabolomics data. MetCirc uses the Spectrum2 and 
  Spectra infrastructure defined in the package MSnbase that stores 
  MS/MS spectra. MetCirc offers functionality to calculate 
  similarity between precursors based on the normalised dot product, neutral
  losses or user-defined functions and 
  visualise similarities in a circular layout. Within the interactive framework
  the user can annotate MS/MS features based on their similarity to 
  (known) related MS/MS features. 
License: GPL (>= 3)
RoxygenNote: 6.1.1