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When reading the data we should use unified column headers for downstream processing.
Current header in MAF are (plus potential mapping) database_identifier chemical_formula smiles => smiles inchi => inchi metabolite_identification mass_to_charge => mz fragmentation modifications charge retention_time => rtime (in seconds) taxid => taxid species => species database database_version reliability => msi uri search_engine search_engine_score smallmolecule_abundance_sub smallmolecule_abundance_stdev_sub smallmolecule_abundance_std_error_sub
The text was updated successfully, but these errors were encountered:
When reading the data we should use unified column headers for downstream processing.
Current header in MAF are (plus potential mapping)
database_identifier
chemical_formula
smiles
=>smiles
inchi
=>inchi
metabolite_identification
mass_to_charge
=>mz
fragmentation
modifications
charge
retention_time
=>rtime
(in seconds)taxid
=>taxid
species
=>species
database
database_version
reliability
=>msi
uri
search_engine
search_engine_score
smallmolecule_abundance_sub
smallmolecule_abundance_stdev_sub
smallmolecule_abundance_std_error_sub
The text was updated successfully, but these errors were encountered: