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dnabert.yaml
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dnabert.yaml
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name: dnabert
channels:
- pytorch
- nvidia
- bioconda
- defaults
- conda-forge
dependencies:
- _libgcc_mutex=0.1=main
- _openmp_mutex=5.1=1_gnu
- blas=1.0=mkl
- bzip2=1.0.8=h7b6447c_0
- ca-certificates=2023.01.10=h06a4308_0
- certifi=2021.5.30=py36h06a4308_0
- cuda-cudart=11.8.89=0
- cuda-cupti=11.8.87=0
- cuda-libraries=11.8.0=0
- cuda-nvrtc=11.8.89=0
- cuda-nvtx=11.8.86=0
- cuda-runtime=11.8.0=0
- cudatoolkit=11.3.1=ha36c431_9
- cycler=0.11.0=pyhd3eb1b0_0
- dataclasses=0.8=pyh4f3eec9_6
- dbus=1.13.18=hb2f20db_0
- expat=2.4.9=h6a678d5_0
- ffmpeg=4.3=hf484d3e_0
- fontconfig=2.14.1=h52c9d5c_1
- freetype=2.12.1=h4a9f257_0
- glib=2.69.1=h4ff587b_1
- gmp=6.2.1=h295c915_3
- gnutls=3.6.15=he1e5248_0
- gst-plugins-base=1.14.1=h6a678d5_1
- gstreamer=1.14.1=h5eee18b_1
- icu=58.2=he6710b0_3
- intel-openmp=2022.1.0=h9e868ea_3769
- jpeg=9e=h5eee18b_1
- kiwisolver=1.3.1=py36h2531618_0
- lame=3.100=h7b6447c_0
- lcms2=2.12=h3be6417_0
- ld_impl_linux-64=2.38=h1181459_1
- lerc=3.0=h295c915_0
- libblas=3.9.0=1_h86c2bf4_netlib
- libcblas=3.9.0=5_h92ddd45_netlib
- libcublas=11.11.3.6=0
- libcufft=10.9.0.58=0
- libcufile=1.6.0.25=0
- libcurand=10.3.2.56=0
- libcusolver=11.4.1.48=0
- libcusparse=11.7.5.86=0
- libdeflate=1.17=h5eee18b_0
- libffi=3.3=he6710b0_2
- libgcc-ng=11.2.0=h1234567_1
- libgfortran-ng=11.2.0=h00389a5_1
- libgfortran5=11.2.0=h1234567_1
- libgomp=11.2.0=h1234567_1
- libiconv=1.16=h7f8727e_2
- libidn2=2.3.2=h7f8727e_0
- liblapack=3.9.0=5_h92ddd45_netlib
- libnpp=11.8.0.86=0
- libnvjpeg=11.9.0.86=0
- libpng=1.6.39=h5eee18b_0
- libstdcxx-ng=11.2.0=h1234567_1
- libtasn1=4.19.0=h5eee18b_0
- libtiff=4.5.0=h6a678d5_2
- libunistring=0.9.10=h27cfd23_0
- libuuid=1.41.5=h5eee18b_0
- libuv=1.44.2=h5eee18b_0
- libwebp-base=1.2.4=h5eee18b_1
- libxcb=1.15=h7f8727e_0
- libxml2=2.9.14=h74e7548_0
- lz4-c=1.9.4=h6a678d5_0
- matplotlib=3.3.4=py36h06a4308_0
- matplotlib-base=3.3.4=py36h62a2d02_0
- mkl=2020.2=256
- mkl-service=2.3.0=py36he8ac12f_0
- mkl_fft=1.3.0=py36h54f3939_0
- mkl_random=1.1.1=py36h0573a6f_0
- ncurses=6.4=h6a678d5_0
- nettle=3.7.3=hbbd107a_1
- numpy=1.19.2=py36h54aff64_0
- numpy-base=1.19.2=py36hfa32c7d_0
- olefile=0.46=py36_0
- openh264=2.1.1=h4ff587b_0
- openjpeg=2.4.0=h3ad879b_0
- openssl=1.1.1t=h7f8727e_0
- pcre=8.45=h295c915_0
- pillow=8.3.1=py36h2c7a002_0
- pip=21.2.2=py36h06a4308_0
- pyqt=5.9.2=py36h05f1152_2
- python=3.6.13=h12debd9_1
- python-dateutil=2.8.2=pyhd3eb1b0_0
- python_abi=3.6=2_cp36m
- pytorch=1.10.2=py3.6_cuda11.3_cudnn8.2.0_0
- pytorch-cuda=11.8=h7e8668a_3
- pytorch-mutex=1.0=cuda
- qt=5.9.7=h5867ecd_1
- readline=8.2=h5eee18b_0
- seaborn=0.11.2=pyhd3eb1b0_0
- setuptools=58.0.4=py36h06a4308_0
- sip=4.19.8=py36hf484d3e_0
- six=1.16.0=pyhd3eb1b0_1
- sqlite=3.41.1=h5eee18b_0
- tk=8.6.12=h1ccaba5_0
- torchaudio=0.10.2=py36_cu113
- torchvision=0.11.3=py36_cu113
- tornado=6.1=py36h27cfd23_0
- typing_extensions=4.1.1=pyh06a4308_0
- wheel=0.37.1=pyhd3eb1b0_0
- xz=5.2.10=h5eee18b_1
- zlib=1.2.13=h5eee18b_0
- zstd=1.5.5=hc292b87_0
- pip:
- absl-py==1.4.0
- biopython==1.79
- boto3==1.23.10
- botocore==1.26.10
- cachetools==4.2.4
- charset-normalizer==2.0.12
- click==8.0.4
- filelock==3.4.1
- google-auth==2.17.3
- google-auth-oauthlib==0.4.6
- grpcio==1.48.2
- idna==3.4
- importlib-metadata==4.8.3
- importlib-resources==5.4.0
- jmespath==0.10.0
- joblib==1.1.1
- markdown==3.3.7
- oauthlib==3.2.2
- packaging==21.3
- pandas==1.1.5
- patsy==0.5.3
- protobuf==3.19.6
- pyahocorasick==2.0.0
- pyasn1==0.4.8
- pyasn1-modules==0.2.8
- pybedtools==0.9.0
- pyparsing==3.0.9
- pysam==0.21.0
- pytz==2023.3
- regex==2022.10.31
- requests==2.27.1
- requests-oauthlib==1.3.1
- rsa==4.9
- s3transfer==0.5.2
- sacremoses==0.0.53
- scikit-learn==0.24.2
- scipy==1.5.4
- sentencepiece==0.1.91
- seqeval==1.2.2
- statsmodels==0.12.2
- tensorboard==2.10.1
- tensorboard-data-server==0.6.1
- tensorboard-plugin-wit==1.8.1
- tensorboardx==2.6
- threadpoolctl==3.1.0
- tokenizers==0.5.0
- tqdm==4.64.1
- urllib3==1.26.15
- werkzeug==2.0.3
- zipp==3.6.0
prefix: /jet/home/mukundan/miniconda3/envs/dnabert