From 775ed188f99ec18edb78913794d98fcdbfe605e0 Mon Sep 17 00:00:00 2001 From: richardbruskiewich Date: Fri, 11 Aug 2023 19:24:51 -0700 Subject: [PATCH] Documenting and preparing release 3.8.1 of the reasoner-validator --- CHANGELOG.md | 7 ++++++ poetry.lock | 61 +++++++++++++++++++++++++++++++------------------- pyproject.toml | 2 +- 3 files changed, 46 insertions(+), 24 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index c2a6635..fb8200c 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -2,6 +2,13 @@ The Reasoner Validator package is evolving along with progress in TRAPI and Biolink Model standards within the NCATS Biomedical Knowledge Translator. +## 3.8.1 +- Generally repaired validation 'sources' ('source_trail') context recording to cover all applicable validation message cases (especially, edge 'qualifier' validation); tested with unit tests +- TRAPIGraphType class moved up the class/module hierarchy, alongside ValidatorReporter; strict_validation as Optional[bool] wrapped in the is_strict_validation() method which uses graph_type to decide on None default strictness (based on graph type) +- TRAPI and Biolink Model versions resolved now only reported in logger.info, not stderr +- only preset target_provenance in validator reporter constructors, not the various method signatures +- add 'categories' into edge context labels for reports (long lists of categories may be challenging here but ...) + ## 3.8.0 - Internal class hierarchy restructured for logical clarity in recent releases, formally highlighted in this release - Most visible TRAPIResponseValidator class (previously) moved from the **`reasoner_validator.__init__.py`** package module, into its own **`reasoner_validator.validator`** module diff --git a/poetry.lock b/poetry.lock index 41c2982..be5f0fd 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1205,45 +1205,54 @@ dev = ["bump2version", "sphinxcontrib-httpdomain", "transifex-client", "wheel"] [[package]] name = "sphinxcontrib-applehelp" -version = "1.0.4" +version = "1.0.6" description = "sphinxcontrib-applehelp is a Sphinx extension which outputs Apple help books" optional = true -python-versions = ">=3.8" +python-versions = ">=3.9" files = [ - {file = "sphinxcontrib-applehelp-1.0.4.tar.gz", hash = "sha256:828f867945bbe39817c210a1abfd1bc4895c8b73fcaade56d45357a348a07d7e"}, - {file = "sphinxcontrib_applehelp-1.0.4-py3-none-any.whl", hash = "sha256:29d341f67fb0f6f586b23ad80e072c8e6ad0b48417db2bde114a4c9746feb228"}, + {file = "sphinxcontrib_applehelp-1.0.6-py3-none-any.whl", hash = "sha256:c0578efa23cab5a2f3aaa8af5691b952433f4fdfaac255befd3452448e7ea4a4"}, + {file = "sphinxcontrib_applehelp-1.0.6.tar.gz", hash = "sha256:a59274de7a952a99af36b8a5092352d9249279c0e3280b7dceaae8e15873c942"}, ] +[package.dependencies] +Sphinx = ">=5" + [package.extras] lint = ["docutils-stubs", "flake8", "mypy"] test = ["pytest"] [[package]] name = "sphinxcontrib-devhelp" -version = "1.0.2" -description = "sphinxcontrib-devhelp is a sphinx extension which outputs Devhelp document." +version = "1.0.4" +description = "sphinxcontrib-devhelp is a sphinx extension which outputs Devhelp documents" optional = true -python-versions = ">=3.5" +python-versions = ">=3.9" files = [ - 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