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RMAVIS 1.0.1 (2024-08-08)

  • Modifications: NA
  • Fixes:
    • Removing superfluous file - "./app.R".
    • Ensuring all internal constants are prefixed in "surveyData_server.R".
  • New Features:
    • Adding deployment helper file "./deploy.R".
    • Adding reference to published JOSS paper and updating "CITATION.cff" file.

RMAVIS 1.0 (2024-07-02)

  • Modifications:
    • Updating README to include instructions on installing a LaTeX distribution using {tinytex}.
    • Removing Dockerfile and docker-compose.yml as they are currently superfluous.
    • Bundling app files into ./inst/app
  • Fixes:
    • Streamlining dependencies, see the imports listed in DESCRIPTION and packages loaded in ./inst/app/app.R
  • New Features:
    • Adding News section.
    • Adding function to run app - RMAVIS::runApp().
    • Adding contribution guidelines in CONTRIBUTING.md.

RMAVIS 0.9998 (2024-05-22)

  • Modifications:
    • Improving the README and including it in a home page of the app.
    • Adding ability to close modal popups by clicking outside the modal.
    • Transferring repository to NERC-CEH organisation.
    • Setting documentation iframe to 85vh.
    • Removing BRC_old and BRC_new from RMAVIS::concordance as it is currently incomplete.
    • Changing names in RMAVIS::concordance: "assignNVCName" -> "originalTaxonName" and "proposedSpecies" -> "rmavisTaxonName".
    • Updating JOSS paper to reflect the addition of the Alage taxa present in SM1.
    • Moving Options sidebar to application nav_panel only.
  • Fixes:
    • Fixing issue where changing the cover scale does not trigger re-validation.
  • New Features: NA

RMAVIS 0.9997 (2024-05-06)

RMAVIS 0.9996 (2024-04-30)

  • Modifications:
    • Adding package dependency references to JOSS paper.
    • Removing {janitor} dependency.
    • Changing MVA option "Survey Quadrat Change" to "Trajectory".
    • Ensuring accepted species are sorted alphabetically.
    • Moving to NBN Tracheophyta and Pteridophyta child taxa for vascular plants to align with bryophytes and provide a single taxonomic backbone.
  • Fixes:
    • Ensuring author information in DESCRIPTION file are all separated by commas.
  • New Features: NA

RMAVIS 0.9995 (2024-04-26)

  • Modifications:
    • Changing licence to the OSI-approved LGPL-3.0 licence to ensure compliance with JOSS.
  • Fixes: NA
  • New Features: NA

RMAVIS 0.9994 (2024-04-21)

  • Modifications: NA
  • Fixes:
    • Fixing missing bryophytes following NBN concordance move.
  • New Features: NA

RMAVIS 0.9993 (2024-04-21)

  • Modifications:
    • Changing licence to CC BY 4.0 ready for v1.
  • Fixes:
    • Fixing issue where group-re-allocation table fails if quadrat ID's are integers.
  • New Features: NA

RMAVIS 0.9992 (2024-04-17)

  • Modifications:
    • Updating author list.
  • Fixes: NA
  • New Features: NA

RMAVIS 0.9991 (2024-04-17)

  • Modifications:
    • Updating author list.
  • Fixes: NA
  • New Features: NA

RMAVIS 0.999 (2024-04-16)

  • Modifications:
    • Updating to taxonomic backbone to use BSBI February 2024 taxon list.
    • Minimising the number of bundled datasets.
    • Removing assignNVC dependency.
  • Fixes:
    • Ensuring cover values are passed to surveyData_mat for use in Simpson diversity indices.
    • Ensure all assignment results reset upon Run Analysis, even if not run.
  • New Features:
    • Adding option to disable the calculation of similarities for quadrats.
    • Adding Scottish oceanic wet grassland communities.
    • Ensuring all functions are covered by tests.
    • Adding JOSS paper.
    • Adding ability to turn quadrat similarities on or off.
    • Adding Scottish oceanic wet grassland communities.

RMAVIS 0.995 (2024-04-01)

  • Modifications:
    • Improving function to compose syntopic tables.
  • Fixes:
    • Adding .csv extension to downloadable csv files.
  • New Features: NA

RMAVIS 0.994 (2024-03-26)

  • Modifications: NA
  • Fixes:
    • Ensuring cover scale is correctly linked to survey data table.
    • Ensuring RMAVIS results .xlsx can be downloaded if the number of plots per group and year-group are less than 5.
    • Fixing NPMS M habitat correspondences.
  • New Features:
    • Adding button to clear survey data table.

RMAVIS 0.993 (2024-03-21)

  • Modifications: NA
  • Fixes:
    • Fixing MAVIS upload.
  • New Features: NA

RMAVIS 0.992 (2024-03-19)

  • Modifications: NA
  • Fixes:
    • Fixing bryophyte filtering from example data.
  • New Features: NA

RMAVIS 0.991 (2024-03-19)

  • Modifications: NA
  • Fixes:
    • Ensuring "Confirm Upload" button is disabled when the uploaded data column names are incorrect.
  • New Features:
    • Adding downloadable .xslx containing RMAVIS results.
    • Adding Cover Scale option.
    • Adding option to upload old MAVIS files.
    • Adding Habitat Correspondences to report.

RMAVIS 0.99 (2024-03-14)

  • Modifications: NA
  • Fixes:
    • Ensuring all constants are bundled in sysdata.rda.
    • Ensuring RMAVIS package contents are loaded when starting app.
  • New Features: NA

RMAVIS 0.983 (2024-03-14)

  • Modifications:
    • Converting to R package format.
  • Fixes:
    • Fixing MVA select quadrats.
  • New Features:
    • Adding multiple composed floristic tables.

RMAVIS 0.982 (2024-03-11)

  • Modifications: NA
  • Fixes:
    • Fixing Species.Ignore == "Yes"
  • New Features: NA

RMAVIS 0.981 (2024-03-09)

  • Modifications: NA
  • Fixes:
    • Ensuring species-quadrat duplicate check is included in ok to proceed.
    • Fixing jump issue in species adjustment table, now using Yes and No.
  • New Features: NA

RMAVIS 0.98 (2024-03-06)

  • Modifications: NA
  • Fixes:
    • Ensuring manual entry works.
    • Ensuring single plot samples work.
  • New Features: NA

RMAVIS 0.97 (2024-03-05)

  • Modifications: NA
  • Fixes:
    • Updating documentation to reflect new MVA functionality.
    • Fixing group survey plots option in MVA module.
  • New Features: NA

RMAVIS 0.96 (2024-03-02)

  • Modifications:
    • Changing name, MAVIS -> RMAVIS
    • Removing site and group Jaccard similarity results.
    • Refining code throughout.
    • Trimming dependencies.
  • Fixes: NA
  • New Features:
    • Adding pseudo-quadrat and sample quadrat centroids in MVA.
    • Adding setupData module which allows modification of bundled datasets.
    • Adding a bryophyte switch to include-exclude bryophyte taxa.
    • Now loading dependencies in load_packages.R.

RMAVIS 0.95 (2024-01-24)

  • Modifications:
    • Removing unnecessary upload data checks.
    • Making survey data availability table searchable.
    • Changing nomenclature for releve to plot.
  • Fixes:
    • Ensuring report renders correctly using new surveyDataSummary object data.
  • New Features: NA

RMAVIS 0.94 (2024-01-18)

  • Modifications: NA
  • Fixes:
    • Ensuring the number of quadrats per group is passed to the floristic tables module through the new survey data summary module.
  • New Features: NA

RMAVIS 0.93 (2024-01-18)

  • Modifications: NA
  • Fixes: NA
  • New Features:
    • Adding survey data summary module.
    • Adding quadrat re-grouping tool.

RMAVIS 0.92 (2024-01-18)

  • Modifications: NA
  • Fixes: NA
  • New Features:
    • Adding Czekanowski index method for Site and Group NVC assignment calculations.

RMAVIS 0.91 (2024-01-11)

  • Modifications: NA
  • Fixes: NA
  • New Features:
    • Adding privacy policy section

RMAVIS 0.9 (2024-01-09)

  • First release for user testing.
  • Modifications: NA
  • Fixes: NA
  • New Features: NA