From 8caf6861dca7da53390f76ea16f92586d1c44300 Mon Sep 17 00:00:00 2001 From: ZekeMarshall Date: Sat, 2 Mar 2024 07:16:50 +0000 Subject: [PATCH] Version0.96 --- docs/documentation.Rmd | 15 +++++++++++---- www/documentation.html | 20 ++++++++++++++++---- 2 files changed, 27 insertions(+), 8 deletions(-) diff --git a/docs/documentation.Rmd b/docs/documentation.Rmd index 228623f..0212a4f 100644 --- a/docs/documentation.Rmd +++ b/docs/documentation.Rmd @@ -101,10 +101,10 @@ The development of computational methods and programs for the assignment of vegetation survey data to NVC communities began with the development of TABLEFIT [@hill1989; @marrs2019]. The most recent program, the Modular Analysis of Vegetation Information System (MAVIS), was -originally developed by @smart2016mavsi as a Windows application, with +originally developed by @smart2016mavis as a Windows application, with the latest version released in 2021. -This R Shiny implementation of MAVIS - RMAVIS - is the newest program in this +This R Shiny implementation of MAVIS (**RMAVIS**) is the newest program in this series, aiming to provide a web-based and easily operable system which can be updated and improved over time. @@ -651,12 +651,19 @@ Marshall, Z., Smart, S., and Harrower, C.. (2024). RMAVIS. v0.96 -2024/02/XX +2024/03/02 - Modifications: + - Changing name, MAVIS -> RMAVIS - Removing site and group Jaccard similarity results. + - Refining code throughout. + - Trimming dependencies. - Fixes: NA -- New Features: NA +- New Features: + - Adding pseudo-quadrat and sample quadrat centroids in MVA. + - Adding setupData module which allows modification of bundled datasets. + - Adding a bryophyte switch to include/exclude bryophyte taxa. + - Now loading dependencies in `load_packages.R`. diff --git a/www/documentation.html b/www/documentation.html index 2eb2bf6..165c823 100644 --- a/www/documentation.html +++ b/www/documentation.html @@ -312,9 +312,9 @@

1 Introduction

of vegetation survey data to NVC communities began with the development of TABLEFIT (Hill 1989; Marrs 2019). The most recent program, the Modular Analysis of Vegetation Information System (MAVIS), was -originally developed by (smart2016mavsi?) as a Windows application, with +originally developed by S. Smart, Goodwin, and Wallace (2016) as a Windows application, with the latest version released in 2021.

-

This R Shiny implementation of MAVIS - RMAVIS - is the newest program in this +

This R Shiny implementation of MAVIS (RMAVIS) is the newest program in this series, aiming to provide a web-based and easily operable system which can be updated and improved over time.

@@ -993,14 +993,23 @@

5 Release Log

v0.96 -

2024/02/XX

+

2024/03/02

@@ -1171,6 +1180,9 @@

References

Smart, S. M., C. M. Wood, F. M. Seaton, A. McMullen, S. E. Ward, R. Ward, J. O’Reilly, et al. 2024. “Broadleaved Woodland Survey of Great Britain, 2020-2022.” NERC EDS Environmental Information Data Centre. https://doi.org/10.5285/42C203C8-44DE-40E2-A694-B1E8CBD4C8E1.
+
+Smart, S., A. Goodwin, and H. Wallace. 2016. MAVIS (Ver 1.03) User Manual. Edited by S. Smart. +
Smart, Simon M., Aaron M. Ellison, Robert G. H. Bunce, Robert H. Marrs, Keith J. Kirby, Adam Kimberley, Andy W. Scott, and David R. Foster. 2014. “Quantifying the Impact of an Extreme Climate Event on Species Diversity in Fragmented Temperate Forests: The Effect of the October 1987 Storm on British Broadleaved Woodlands.” Edited by Frank Gilliam. Journal of Ecology 102 (5): 1273–87. https://doi.org/10.1111/1365-2745.12291.