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environment_nova.yml
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environment_nova.yml
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name: nova
channels:
- pytorch
- nvidia
- conda-forge
- defaults
dependencies:
- _libgcc_mutex=0.1=main
- _openmp_mutex=5.1=1_gnu
- abseil-cpp=20230802.0=h6a678d5_2
- absl-py=2.1.0=py39h06a4308_0
- aiohttp=3.9.3=py39h5eee18b_0
- aiosignal=1.2.0=pyhd3eb1b0_0
- asttokens=2.0.5=pyhd3eb1b0_0
- async-timeout=4.0.3=py39h06a4308_0
- attrs=23.1.0=py39h06a4308_0
- backcall=0.2.0=pyhd3eb1b0_0
- blas=1.0=mkl
- blinker=1.6.2=py39h06a4308_0
- bottleneck=1.3.7=py39ha9d4c09_0
- brotli=1.0.9=h5eee18b_7
- brotli-bin=1.0.9=h5eee18b_7
- brotli-python=1.0.9=py39h6a678d5_8
- bzip2=1.0.8=h5eee18b_5
- c-ares=1.19.1=h5eee18b_0
- ca-certificates=2024.7.2=h06a4308_0
- cachetools=4.2.2=pyhd3eb1b0_0
- certifi=2024.8.30=py39h06a4308_0
- cffi=1.16.0=py39h5eee18b_0
- charset-normalizer=2.0.4=pyhd3eb1b0_0
- click=8.1.7=py39h06a4308_0
- cloudpickle=2.2.1=py39h06a4308_0
- colorama=0.4.6=pyhd8ed1ab_0
- colorcet=3.1.0=py39h06a4308_0
- comm=0.2.1=py39h06a4308_0
- contourpy=1.2.0=py39hdb19cb5_0
- cryptography=42.0.5=py39hdda0065_0
- cuda-cudart=11.8.89=0
- cuda-cupti=11.8.87=0
- cuda-libraries=11.8.0=0
- cuda-nvrtc=11.8.89=0
- cuda-nvtx=11.8.86=0
- cuda-runtime=11.8.0=0
- cycler=0.11.0=pyhd3eb1b0_0
- cyrus-sasl=2.1.28=h52b45da_1
- dbus=1.13.18=hb2f20db_0
- debugpy=1.6.7=py39h6a678d5_0
- decorator=5.1.1=pyhd3eb1b0_0
- exceptiongroup=1.2.0=py39h06a4308_0
- executing=0.8.3=pyhd3eb1b0_0
- expat=2.6.2=h6a678d5_0
- ffmpeg=4.3=hf484d3e_0
- filelock=3.13.1=py39h06a4308_0
- fontconfig=2.14.1=h4c34cd2_2
- fonttools=4.51.0=py39h5eee18b_0
- freetype=2.12.1=h4a9f257_0
- frozenlist=1.4.0=py39h5eee18b_0
- glib=2.78.4=h6a678d5_0
- glib-tools=2.78.4=h6a678d5_0
- gmp=6.2.1=h295c915_3
- gmpy2=2.1.2=py39heeb90bb_0
- gnutls=3.6.15=he1e5248_0
- google-auth=2.6.0=pyhd3eb1b0_0
- google-auth-oauthlib=0.5.2=py39h06a4308_0
- grpc-cpp=1.48.2=he1ff14a_4
- grpcio=1.48.2=py39he1ff14a_4
- gst-plugins-base=1.14.1=h6a678d5_1
- gstreamer=1.14.1=h5eee18b_1
- gtest=1.14.0=hdb19cb5_0
- h2=4.1.0=pyhd8ed1ab_0
- hpack=4.0.0=pyh9f0ad1d_0
- hyperframe=6.0.1=pyhd8ed1ab_0
- icu=73.1=h6a678d5_0
- idna=3.4=py39h06a4308_0
- importlib-metadata=7.0.1=py39h06a4308_0
- importlib_metadata=7.0.1=hd3eb1b0_0
- importlib_resources=6.1.1=py39h06a4308_1
- intel-openmp=2023.1.0=hdb19cb5_46306
- ipykernel=6.28.0=py39h06a4308_0
- ipython=8.15.0=py39h06a4308_0
- jedi=0.18.1=py39h06a4308_1
- jinja2=3.1.3=py39h06a4308_0
- joblib=1.2.0=py39h06a4308_0
- jpeg=9e=h5eee18b_1
- jupyter_client=8.6.0=py39h06a4308_0
- jupyter_core=5.5.0=py39h06a4308_0
- kiwisolver=1.4.4=py39h6a678d5_0
- krb5=1.20.1=h143b758_1
- lame=3.100=h7b6447c_0
- lcms2=2.12=h3be6417_0
- ld_impl_linux-64=2.38=h1181459_1
- lerc=3.0=h295c915_0
- libbrotlicommon=1.0.9=h5eee18b_7
- libbrotlidec=1.0.9=h5eee18b_7
- libbrotlienc=1.0.9=h5eee18b_7
- libclang=14.0.6=default_hc6dbbc7_1
- libclang13=14.0.6=default_he11475f_1
- libcublas=11.11.3.6=0
- libcufft=10.9.0.58=0
- libcufile=1.9.1.3=0
- libcups=2.4.2=h2d74bed_1
- libcurand=10.3.5.147=0
- libcusolver=11.4.1.48=0
- libcusparse=11.7.5.86=0
- libdeflate=1.17=h5eee18b_1
- libedit=3.1.20230828=h5eee18b_0
- libffi=3.4.4=h6a678d5_0
- libgcc-ng=11.2.0=h1234567_1
- libgfortran-ng=11.2.0=h00389a5_1
- libgfortran5=11.2.0=h1234567_1
- libglib=2.78.4=hdc74915_0
- libgomp=11.2.0=h1234567_1
- libiconv=1.16=h7f8727e_2
- libidn2=2.3.4=h5eee18b_0
- libjpeg-turbo=2.0.0=h9bf148f_0
- libllvm14=14.0.6=hdb19cb5_3
- libnpp=11.8.0.86=0
- libnvjpeg=11.9.0.86=0
- libpng=1.6.39=h5eee18b_0
- libpq=12.17=hdbd6064_0
- libprotobuf=3.20.3=he621ea3_0
- libsodium=1.0.18=h7b6447c_0
- libstdcxx-ng=11.2.0=h1234567_1
- libtasn1=4.19.0=h5eee18b_0
- libtiff=4.5.1=h6a678d5_0
- libunistring=0.9.10=h27cfd23_0
- libuuid=1.41.5=h5eee18b_0
- libwebp-base=1.3.2=h5eee18b_0
- libxcb=1.15=h7f8727e_0
- libxkbcommon=1.0.1=h5eee18b_1
- libxml2=2.10.4=hfdd30dd_2
- lightning=2.2.4=pyhd8ed1ab_0
- lightning-utilities=0.11.2=pyhd8ed1ab_0
- llvm-openmp=14.0.6=h9e868ea_0
- llvmlite=0.42.0=py39h6a678d5_0
- lz4-c=1.9.4=h6a678d5_0
- markdown=3.4.1=py39h06a4308_0
- markupsafe=2.1.3=py39h5eee18b_0
- matplotlib=3.8.4=py39h06a4308_0
- matplotlib-base=3.8.4=py39h1128e8f_0
- matplotlib-inline=0.1.6=py39h06a4308_0
- mkl=2023.1.0=h213fc3f_46344
- mkl-service=2.4.0=py39h5eee18b_1
- mkl_fft=1.3.8=py39h5eee18b_0
- mkl_random=1.2.4=py39hdb19cb5_0
- mpc=1.1.0=h10f8cd9_1
- mpfr=4.0.2=hb69a4c5_1
- mpmath=1.3.0=py39h06a4308_0
- mscorefonts=0.0.1=3
- multidict=6.0.4=py39h5eee18b_0
- mysql=5.7.24=h721c034_2
- ncurses=6.4=h6a678d5_0
- nest-asyncio=1.6.0=py39h06a4308_0
- nettle=3.7.3=hbbd107a_1
- networkx=3.1=py39h06a4308_0
- numba=0.59.1=py39h6a678d5_0
- numexpr=2.8.7=py39h85018f9_0
- numpy=1.26.4=py39h5f9d8c6_0
- numpy-base=1.26.4=py39hb5e798b_0
- oauthlib=3.2.2=py39h06a4308_0
- openh264=2.1.1=h4ff587b_0
- openjpeg=2.4.0=h3ad879b_0
- openssl=3.0.15=h5eee18b_0
- packaging=23.2=py39h06a4308_0
- pandas=2.2.1=py39h6a678d5_0
- parso=0.8.3=pyhd3eb1b0_0
- patsy=0.5.6=py39h06a4308_0
- pcre2=10.42=hebb0a14_0
- pexpect=4.8.0=pyhd3eb1b0_3
- pickleshare=0.7.5=pyhd3eb1b0_1003
- pillow=10.2.0=py39h5eee18b_0
- pip=23.3.1=py39h06a4308_0
- platformdirs=3.10.0=py39h06a4308_0
- ply=3.11=py39h06a4308_0
- prompt-toolkit=3.0.43=py39h06a4308_0
- psutil=5.9.0=py39h5eee18b_0
- ptyprocess=0.7.0=pyhd3eb1b0_2
- pure_eval=0.2.2=pyhd3eb1b0_0
- pyasn1=0.4.8=pyhd3eb1b0_0
- pyasn1-modules=0.2.8=py_0
- pycparser=2.21=pyhd3eb1b0_0
- pygments=2.15.1=py39h06a4308_1
- pyjwt=2.4.0=py39h06a4308_0
- pyopenssl=24.0.0=py39h06a4308_0
- pyparsing=3.0.9=py39h06a4308_0
- pyqt=5.15.10=py39h6a678d5_0
- pyqt5-sip=12.13.0=py39h5eee18b_0
- pysocks=1.7.1=py39h06a4308_0
- python=3.9.19=h955ad1f_0
- python-dateutil=2.8.2=pyhd3eb1b0_0
- python-tzdata=2023.3=pyhd3eb1b0_0
- pytorch=2.2.2=py3.9_cuda11.8_cudnn8.7.0_0
- pytorch-cuda=11.8=h7e8668a_5
- pytorch-lightning=2.2.2=pyhd8ed1ab_0
- pytorch-mutex=1.0=cuda
- pytz=2023.3.post1=py39h06a4308_0
- pyyaml=6.0.1=py39h5eee18b_0
- pyzmq=25.1.2=py39h6a678d5_0
- qt-main=5.15.2=h53bd1ea_10
- re2=2022.04.01=h295c915_0
- readline=8.2=h5eee18b_0
- requests=2.31.0=py39h06a4308_1
- requests-oauthlib=1.3.0=py_0
- rsa=4.7.2=pyhd3eb1b0_1
- scikit-learn=1.3.0=py39h1128e8f_1
- scipy=1.12.0=py39h5f9d8c6_0
- setuptools=68.2.2=py39h06a4308_0
- shap=0.42.1=py39h1128e8f_0
- sip=6.7.12=py39h6a678d5_0
- six=1.16.0=pyhd3eb1b0_1
- slicer=0.0.7=pyhd3eb1b0_0
- sqlite=3.41.2=h5eee18b_0
- stack_data=0.2.0=pyhd3eb1b0_0
- statsmodels=0.14.2=py39h5eee18b_0
- sympy=1.12=py39h06a4308_0
- tbb=2021.8.0=hdb19cb5_0
- tensorboard=2.12.1=py39h06a4308_0
- tensorboard-data-server=0.7.0=py39h52d8a92_0
- tensorboard-plugin-wit=1.8.1=py39h06a4308_0
- threadpoolctl=2.2.0=pyh0d69192_0
- tk=8.6.12=h1ccaba5_0
- tomli=2.0.1=py39h06a4308_0
- torchmetrics=1.4.0.post0=pyhd8ed1ab_0
- torchtriton=2.2.0=py39
- torchvision=0.17.2=py39_cu118
- tornado=6.3.3=py39h5eee18b_0
- traitlets=5.7.1=py39h06a4308_0
- typing-extensions=4.9.0=py39h06a4308_1
- typing_extensions=4.9.0=py39h06a4308_1
- tzdata=2024a=h04d1e81_0
- unicodedata2=15.1.0=py39h5eee18b_0
- wcwidth=0.2.5=pyhd3eb1b0_0
- werkzeug=2.3.8=py39h06a4308_0
- wheel=0.41.2=py39h06a4308_0
- xz=5.4.6=h5eee18b_0
- yaml=0.2.5=h7b6447c_0
- yarl=1.9.3=py39h5eee18b_0
- zeromq=4.3.5=h6a678d5_0
- zipp=3.17.0=py39h06a4308_0
- zlib=1.2.13=h5eee18b_0
- zstandard=0.22.0=py39h2c38b39_0
- zstd=1.5.5=hc292b87_0
- pip:
- aws-requests-auth==0.4.3
- boto3==1.34.144
- botocore==1.34.144
- cellpose==2.0
- datasets==2.19.0
- dill==0.3.8
- fastremap==1.15.0
- fsspec==2024.3.1
- huggingface-hub==0.22.2
- imageio==2.35.1
- immutabledict==4.2.0
- info-nce-pytorch==0.1.4
- jmespath==1.0.1
- jsonlines==1.2.0
- jsonschema==4.23.0
- jsonschema-specifications==2023.12.1
- k-means-constrained==0.7.3
- mpi4py-mpich==3.1.5
- multiprocess==0.70.16
- natsort==8.4.0
- opencv-python==4.9.0.80
- opencv-python-headless==4.10.0.84
- ortools==9.10.4067
- protobuf==5.27.2
- pyarrow==16.0.0
- pyarrow-hotfix==0.6
- pynndescent==0.5.12
- pywavelets==1.6.0
- quilt3==5.4.0
- referencing==0.35.1
- regex==2024.4.16
- requests-futures==1.0.0
- rpds-py==0.19.0
- s3transfer==0.10.2
- safetensors==0.4.3
- scikit-image==0.19.3
- seaborn==0.13.2
- shapely==1.8.4
- tenacity==8.5.0
- tifffile==2024.8.30
- tokenizers==0.19.1
- tqdm==4.66.2
- transformers==4.40.0
- umap-learn==0.5.6
- urllib3==1.26.19
- xxhash==3.4.1
prefix: /home/labs/hornsteinlab/sagyk/anaconda3/envs/nova