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Update ShinyCardinal to v1.0.0 #80

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YonghuiDong opened this issue Jul 19, 2024 · 0 comments
Open
6 tasks

Update ShinyCardinal to v1.0.0 #80

YonghuiDong opened this issue Jul 19, 2024 · 0 comments
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enhancement New feature or request Todo

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@YonghuiDong
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YonghuiDong commented Jul 19, 2024

Rationale

This is a major update for R package Cardinal with some breaking changes (v.3.6)

Some highlights include:

  • Redesigned data structures
  • Updated MSImagingExperiment class for MS imaging data with shared m/z values
  • New MSImagingArrays class for MS imaging data with different m/z values
  • All statistical methods (including PCA, PLS, spatial k-means, and spatial shrunken centroids) have been updated for improved speed and simpler storage of results
  • New pre-processing workflow with better support for high-resolution experiments
  • New support for multiple-instance learning
  • New plotting engine

In order to fully leverage the new features and functionalities of Cardinal, and keep pace with it, I need to update ShinyCardinal accordingly.

To-dos (details to be added)

  • Update old functions from Cardinal
  • Introduce new functions from Cardinal
  • Fix penitential bugs
  • Introduce some user requested features
  • Update UI
  • Submit Cardinal to Bioconductor

Any recommendations and contributions are welcomed. ♥️♥️♥️

@YonghuiDong YonghuiDong added enhancement New feature or request Todo labels Jul 19, 2024
@YonghuiDong YonghuiDong self-assigned this Jul 19, 2024
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