README.md

SteinerNet v2

Steiner Tree Approach for Graph Analysis

This library is made in R programming language.

This version of SteirNet (v2) works with igraph.

Older versions

older versions of SteirNet upto (v1.3) works with igraph0.

Installation

For using this library these libraries are needed to included:

RBGL http://www.bioconductor.org/packages/release/bioc/html/RBGL.html

For that run:

source("https://bioconductor.org/biocLite.R")

biocLite("RBGL")

igraph https://cran.r-project.org/web/packages/igraph/index.html

install.packages("igraph")

igraph0 for versions upto 1.7

download and manually install the last version from here https://cran.r-project.org/src/contrib/Archive/igraph0/igraph0_0.5.7.tar.gz

limma http://bioconductor.org/packages/release/bioc/html/limma.html

For that run:

source("https://bioconductor.org/biocLite.R")

biocLite("limma")

Version History on Cran

https://cran.r-project.org/src/contrib/Archive/SteinerNet/

News

2017 Nov

Due to number of requests to work with newer version of R which are based on igraph instead of igraph0 I update the code of SteinerNet

Citation

To use this code in your research please cite this the article related to this package:

Steiner tree methods for optimal sub-network identification: an empirical study

Afshin Sadeghi and Holger Fröhlich BMC Bioinformatics 2013 14:144 https://doi.org/10.1186/1471-2105-14-144