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CureHunter Data Transformer Example Java CLI

Example of CLI XSL transformer for licensed CureHunter data. Multithreaded conversion of CureHunter sentence relationship and MeSH keyword tagged NLM PubMed Data ".xml.gz" files to TSV etc.

"medlineCitationTSV.xsl" extracts all medline citation abstracts from the sample "./data/pubmed-sample*.xml.gz" pubmed xml files which contain Drug-Disease relationships.

Usage

Run application through Maven

$ mkdir output
$ ./mvnw -Dexec.args=transform

Run tests & build an executable JAR:

$ ./mvnw package

Run tests as native image & build a native executable:

$ ./mvnw package -Pnative

Original Template java-cli-project-template! Thank you!