packages.yml

name: timeor_conda_env
channels:
  - defaults
  - bioconda
  - conda-forge
dependencies:
  - bedtools=2.29.2 
  - bioconductor-biocparallel=1.20.0 
  - bioconductor-biomart=2.42.0
  - bioconductor-clusterprofiler=3.14.0
  - bioconductor-deseq2=1.26.0
  - bioconductor-dose=3.12.0
  - bioconductor-encodexplorer=2.12.0
  - bioconductor-enrichplot=1.6.0
  - bioconductor-fgsea=1.12.0
  - bioconductor-harman=1.14.0
  - bioconductor-impulsede2=1.10
  - bioconductor-iranges=2.20
  - bioconductor-maSigPro=1.58.0
  - bioconductor-org.dm.eg.db=3.10.0
  - bioconductor-org.hs.eg.db=3.10.0
  - bioconductor-pathview=1.26.0
  - bioconductor-polyester=1.22.0
  - bioconductor-rcistarget=1.6
  - bioconductor-stringdb=1.26.0
  - bioconductor-topgo=2.37.0
  - bowtie2=2.3.5
  - deeptools=3.1.3
  - fastqc=0.11.8
  - future=0.18.2
  - hisat2=2.1.0
  - htseq=0.11.2
  - meme=4.11.2
  - multiqc=1.8
  - natsort=5.5.0
  - numpy=1.16.5
  - numpy-base=1.16.5
  - pandas=0.24.2
  - pip=19.3.1
  - plotly=4.5.2
  - pybigwig=0.3.17
  - pysam=0.15.3
  - python=2.7.17
  - pyyaml=5.1.1
  - r-autoplotly=0.1.2 
  - r-base=3.6.1
  - r-biocmanager=1.30.4
  - r-broom=0.5.6
  - r-cluster=2.0.8
  - r-d3heatmap=0.6.1.2
  - r-data.table=1.12.2
  - r-devtools=2.0.2
  - r-domc=1.3.5
  - r-dorng=1.7.1
  - r-dplyr=1.0.0
  - r-dt=0.5
  - r-europepmc=0.4
  - r-factoextra=1.0.6
  - r-farver=1.1.0
  - r-fastmatch=1.1_0
  - r-fpc=2.2_4
  - r-ggforce=0.3.1
  - r-ggfortify=0.4.8
  - r-ggplot2=3.1.1
  - r-ggplotify=0.0.5
  - r-ggridges=0.5.2
  - r-globaloptions=0.1.0
  - r-graphlayouts=0.7.0
  - r-gridgraphics=0.4_1
  - r-heatmaply=1.0.0
  - r-markdown=0.9
  - r-plotly=4.9.0
  - r-png=0.1_7
  - r-polyclip=1.10_0
  - r-promises=1.0.1
  - r-reticulate=1.12
  - r-rmarkdown=1.12
  - r-rvcheck=0.1.3
  - r-shiny=1.3.2
  - r-shinyalert=1.0
  - r-shinycssloaders=0.3
  - r-shinydashboard=0.7.1
  - r-shinydashboardplus=0.7.0
  - r-shinyjs=1.0
  - r-shinylp=1.1.2
  - r-shinyWidgets
  - r-stringr=1.4.0
  - r-tibble=3.0.4
  - r-tidygraph=1.2.0
  - r-tidyr=1.1.0
  - r-tidyverse=1.2.1
  - r-triebeard=0.3.0
  - r-tweenr=1.0.1
  - r-urltools=1.7.3
  - r-vegan=2.5_6
  - r-zoo=1.8_6
  - samtools=1.9
  - seaborn=0.9.0
  - sra-tools=2.10.0
  - pip:
    - intervene==0.6.4