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This repository has been archived by the owner on Oct 30, 2023. It is now read-only.
I think a critical item here is how the test code is handled as I think it would be useful to exercise the API independent of the implementation. The indirection done with scikit-bio/scikit-bio#1040 probably isn't the best way to go about it, but it works for the moment. Specifically, I think we may want to do a single mixin base per method tested as opposed to having combined code (as is the case with unweighted_unifrac and weighted_unifrac). I suspect there is a common approach that can be taken with the test code which I believe would help to standardize the inclusion of different implementations of methods.
We've decided that educational implementations are better suited for IAB, which will also simplify scikit-bio. This will be revisited in the context of IAB (gregcaporaso/An-Introduction-to-Applied-Bioinformatics#180).
We'd want this to:
See Also
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