From 46906d93b38ff49bc1073f5ef78a7c4ccb73c523 Mon Sep 17 00:00:00 2001
From: Luca Cozzuto <lucacozzuto@gmail.com>
Date: Mon, 5 Aug 2019 13:23:21 +0200
Subject: [PATCH] fixing a mv

---
 lib/NGSaligner.groovy | 6 ++++--
 1 file changed, 4 insertions(+), 2 deletions(-)

diff --git a/lib/NGSaligner.groovy b/lib/NGSaligner.groovy
index a4c2860..3b973d4 100644
--- a/lib/NGSaligner.groovy
+++ b/lib/NGSaligner.groovy
@@ -153,8 +153,10 @@
                   mkdir ${this.output}
                   mv ${this.id}Aligned* ${this.output}/.
                   mv ${this.id}SJ* ${this.output}/.
-                  mv ${this.id}ReadsPerGene* ${this.output}/.
-                  mv ${this.id}Log* ${this.output}/.      
+                  mv ${this.id}Log* ${this.output}/.
+                  if test -f "${this.id}ReadsPerGene*"; then
+                      mv ${this.id}ReadsPerGene* ${this.output}/.
+                  fi      
         """
     }