Crash trying to read HDF5 on windows in CCP4

[ndevenish]

I know this is a CCP4 problem specifically, except that DUI appears to lock up and go unresponsive; and the log bar stays bouncing continuously. This is a DUI problem not handling the crash gracefully.

The log text from the crash is:

C:\CCP4-7\python2.7\lib\site-packages\h5py\__init__.py:68: UserWarning: h5py is running against HDF5 1.10.0 when it was built against 1.8.4, this may cause problems
  '{0}.{1}.{2}'.format(*version.hdf5_built_version_tuple)
HDF5-DIAG: Error detected in HDF5 (1.10.0-patch1) thread 0:
  #000: C:/msys64/home/W1J5/devtools/checkout/hdf5-1.10.0-patch1/src/H5D.c line 375 in H5Dget_space(): not a dataset
    major: Invalid arguments to routine
    minor: Inappropriate type
HDF5-DIAG: Error detected in HDF5 (1.10.0-patch1) thread 0:
  #000: C:/msys64/home/W1J5/devtools/checkout/hdf5-1.10.0-patch1/src/H5S.c line 865 in H5Sget_simple_extent_ndims(): not a dataspace
    major: Invalid arguments to routine
    minor: Inappropriate type
Traceback (most recent call last):
  File "C:\CCP4-7\7.0\lib\py2\site-packages\dui\outputs_n_viewers\img_viewer.py", line 1175, in img_changed_by_user
    self.set_img()
  File "C:\CCP4-7\7.0\lib\py2\site-packages\dui\outputs_n_viewers\img_viewer.py", line 1006, in set_img
    self.img_arr = self.my_sweep.get_raw_data(img_pos)[0]
  File "C:\CCP4-7\7.0\lib\py2\site-packages\cctbx_project\dxtbx\format\FormatMultiImage.py", line 25, in read
    return format_instance.get_raw_data(index)
  File "C:\CCP4-7\7.0\lib\py2\site-packages\cctbx_project\dxtbx\format\FormatNexus.py", line 130, in get_raw_data
    return self._raw_data[index]
  File "C:\CCP4-7\7.0\lib\py2\site-packages\cctbx_project\dxtbx\format\nexus.py", line 1508, in __getitem__
    slice(0, width, 1)))
RuntimeError: dxtbx Internal Error: C:\msys64\home\W1J5\devtools\checkout\cctbx-phaser\cctbx_project\dxtbx\format\boost_python\nexus_ext.cc(39): DXTBX_ASSERT(rank == ndims) failure.
HDF5-DIAG: Error detected in HDF5 (1.10.0-patch1) thread 0:
  #000: C:/msys64/home/W1J5/devtools/checkout/hdf5-1.10.0-patch1/src/H5D.c line 375 in H5Dget_space(): not a dataset
    major: Invalid arguments to routine
    minor: Inappropriate type
HDF5-DIAG: Error detected in HDF5 (1.10.0-patch1) thread 0:
  #000: C:/msys64/home/W1J5/devtools/checkout/hdf5-1.10.0-patch1/src/H5S.c line 865 in H5Sget_simple_extent_ndims(): not a dataspace
    major: Invalid arguments to routine
    minor: Inappropriate type
Traceback (most recent call last):
  File "C:\CCP4-7\7.0\lib\py2\site-packages\dui\outputs_n_viewers\img_viewer.py", line 1167, in stack_changed_by_user
    self.set_img()
  File "C:\CCP4-7\7.0\lib\py2\site-packages\dui\outputs_n_viewers\img_viewer.py", line 1006, in set_img
    self.img_arr = self.my_sweep.get_raw_data(img_pos)[0]
  File "C:\CCP4-7\7.0\lib\py2\site-packages\cctbx_project\dxtbx\format\FormatMultiImage.py", line 25, in read
    return format_instance.get_raw_data(index)
  File "C:\CCP4-7\7.0\lib\py2\site-packages\cctbx_project\dxtbx\format\FormatNexus.py", line 130, in get_raw_data
    return self._raw_data[index]
  File "C:\CCP4-7\7.0\lib\py2\site-packages\cctbx_project\dxtbx\format\nexus.py", line 1508, in __getitem__
    slice(0, width, 1)))
RuntimeError: dxtbx Internal Error: C:\msys64\home\W1J5\devtools\checkout\cctbx-phaser\cctbx_project\dxtbx\format\boost_python\nexus_ext.cc(39): DXTBX_ASSERT(rank == ndims) failure.
HDF5-DIAG: Error detected in HDF5 (1.10.0-patch1) thread 0:
  #000: C:/msys64/home/W1J5/devtools/checkout/hdf5-1.10.0-patch1/src/H5D.c line 375 in H5Dget_space(): not a dataset
    major: Invalid arguments to routine
    minor: Inappropriate type
HDF5-DIAG: Error detected in HDF5 (1.10.0-patch1) thread 0:
  #000: C:/msys64/home/W1J5/devtools/checkout/hdf5-1.10.0-patch1/src/H5S.c line 865 in H5Sget_simple_extent_ndims(): not a dataspace
    major: Invalid arguments to routine
    minor: Inappropriate type
HDF5-DIAG: Error detected in HDF5 (1.10.0-patch1) thread 0:
  #000: C:/msys64/home/W1J5/devtools/checkout/hdf5-1.10.0-patch1/src/H5D.c line 375 in H5Dget_space(): not a dataset
    major: Invalid arguments to routine
    minor: Inappropriate type
HDF5-DIAG: Error detected in HDF5 (1.10.0-patch1) thread 0:
  #000: C:/msys64/home/W1J5/devtools/checkout/hdf5-1.10.0-patch1/src/H5S.c line 865 in H5Sget_simple_extent_ndims(): not a dataspace
    major: Invalid arguments to routine
    minor: Inappropriate type
Traceback (most recent call last):
  File "C:\CCP4-7\7.0\lib\py2\site-packages\dui\m_idials_gui.py", line 630, in update_after_finished
    update_info(self)
  File "C:\CCP4-7\7.0\lib\py2\site-packages\dui\gui_utils.py", line 341, in update_info
    main_obj.img_view.ini_datablock(main_obj.cur_json)
  File "C:\CCP4-7\7.0\lib\py2\site-packages\dui\outputs_n_viewers\img_viewer.py", line 861, in ini_datablock
    self.set_img()
  File "C:\CCP4-7\7.0\lib\py2\site-packages\dui\outputs_n_viewers\img_viewer.py", line 1006, in set_img
    self.img_arr = self.my_sweep.get_raw_data(img_pos)[0]
  File "C:\CCP4-7\7.0\lib\py2\site-packages\cctbx_project\dxtbx\format\FormatMultiImage.py", line 25, in read
    return format_instance.get_raw_data(index)
  File "C:\CCP4-7\7.0\lib\py2\site-packages\cctbx_project\dxtbx\format\FormatNexus.py", line 130, in get_raw_data
    return self._raw_data[index]
  File "C:\CCP4-7\7.0\lib\py2\site-packages\cctbx_project\dxtbx\format\nexus.py", line 1508, in __getitem__
    slice(0, width, 1)))
RuntimeError: dxtbx Internal Error: C:\msys64\home\W1J5\devtools\checkout\cctbx-phaser\cctbx_project\dxtbx\format\boost_python\nexus_ext.cc(39): DXTBX_ASSERT(rank == ndims) failure.
HDF5-DIAG: Error detected in HDF5 (1.10.0-patch1) thread 0:
  #000: C:/msys64/home/W1J5/devtools/checkout/hdf5-1.10.0-patch1/src/H5D.c line 375 in H5Dget_space(): not a dataset
    major: Invalid arguments to routine
    minor: Inappropriate type
HDF5-DIAG: Error detected in HDF5 (1.10.0-patch1) thread 0:
  #000: C:/msys64/home/W1J5/devtools/checkout/hdf5-1.10.0-patch1/src/H5S.c line 865 in H5Sget_simple_extent_ndims(): not a dataspace
    major: Invalid arguments to routine
    minor: Inappropriate type
Traceback (most recent call last):
  File "C:\CCP4-7\7.0\lib\py2\site-packages\dui\m_idials_gui.py", line 493, in tab_changed
    update_info(self)
  File "C:\CCP4-7\7.0\lib\py2\site-packages\dui\gui_utils.py", line 345, in update_info
    main_obj.img_view.ini_reflection_table(main_obj.cur_pick)
  File "C:\CCP4-7\7.0\lib\py2\site-packages\dui\outputs_n_viewers\img_viewer.py", line 955, in ini_reflection_table
    self.set_img()
  File "C:\CCP4-7\7.0\lib\py2\site-packages\dui\outputs_n_viewers\img_viewer.py", line 1006, in set_img
    self.img_arr = self.my_sweep.get_raw_data(img_pos)[0]
  File "C:\CCP4-7\7.0\lib\py2\site-packages\cctbx_project\dxtbx\format\FormatMultiImage.py", line 25, in read
    return format_instance.get_raw_data(index)
  File "C:\CCP4-7\7.0\lib\py2\site-packages\cctbx_project\dxtbx\format\FormatNexus.py", line 130, in get_raw_data
    return self._raw_data[index]
  File "C:\CCP4-7\7.0\lib\py2\site-packages\cctbx_project\dxtbx\format\nexus.py", line 1508, in __getitem__
    slice(0, width, 1)))
RuntimeError: dxtbx Internal Error: C:\msys64\home\W1J5\devtools\checkout\cctbx-phaser\cctbx_project\dxtbx\format\boost_python\nexus_ext.cc(39): DXTBX_ASSERT(rank == ndims) failure.