generate_descendant_mapping.yml

#This is a github actions that run every monday at 12am. It will run generate_decendant_mapping.py off the main
#  github branch and open a pull request to commit the new ontology_decendant files to cellxgene-ontology-guide

name: Generate Ontology Descendant Mappings
on:
  schedule:
    - cron: "0 0 * * 1"

  push:
    paths:
      - "**/ontology-assets/**.json"
      - "**/ontology-assets/**.gz"
    branches:
      - main
  workflow_dispatch:

permissions:
  id-token: write
  contents: write
  pull-requests: write

jobs:
  generate-ontology-descendant-mappings:
    runs-on: ubuntu-latest
    steps:
      - name: Checkout main
        uses: actions/checkout@v4
        with:
          ref: main
          fetch-depth: 1
      - name: Set up Python 3.11
        uses: actions/setup-python@v5
        with:
          python-version: 3.11
      - name: Python cache
        uses: actions/cache@v4
        with:
          path: ~/.cache/pip
          key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements*.txt') }}
          restore-keys: |
            ${{ runner.os }}-pip-
      - name: setup git
        run: |
          git config user.name github-actions
          git config user.email github-actions@github.com
      - name: install requirements
        run: |
          cd ./tools/ontology-builder/
          pip install -r requirements.txt
      - name: generate ontology descendant mappings
        run: |
          python3 tools/ontology-builder/src/descendent_mapping_generator.py
      - name: Create Pull Request
        uses: peter-evans/create-pull-request@v6
        with:
          token: ${{ secrets.GITHUB_TOKEN }}
          add-paths: |
            ./ontology-assets/*.json
          commit-message: "chore: update ontology descendant mappings"
          title: "chore: update ontology descendant mappings"
          branch: update-ontology-descendant-mappings
          base: main
          signoff: true
          draft: false