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nanopore

For long error prone reads, use BLAST or BLASR or LAST for alignment.

  • BALST:
    /gsc/btl/linuxbrew/bin/blastn

  • LAST:
    /gsc/btl/linuxbrew/bin/lastal

DATA:
e.coli K-12 MG1655 strain R7 and R7.3 nanopore reads.
/projects/btl/datasets/ecoli/oxfordNanopore_SEP2014 R7 or R7.3
yeast R7 chemistry
/projects/btl/datasets/scerevisiae/schatz2015_ONT/W303_ONT_Raw_reads.fa