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library_construction_ontology.expanded.yaml
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library_construction_ontology.expanded.yaml
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name: Library_construction_ontology
id: https://example.org/Library-construction-ontology
imports:
- linkml:types
prefixes:
Library_construction_ontology: https://example.org/Library-construction-ontology
linkml: https://w3id.org/linkml/
default_prefix: Library_construction_ontology
enums:
LibraryConstructionOntology_ontology_options:
reachable_from:
source_ontology: obo:efo
source_nodes:
- OBI:0000711
relationship_types:
- rdfs:subClassOf
is_direct: false
include_self: false
permissible_values:
EFO:0007045:
text: EFO:0007045
description: ATAC-seq
meaning: EFO:0007045
EFO:0008906:
text: EFO:0008906
description: scChIP-seq
meaning: EFO:0008906
EFO:0008905:
text: EFO:0008905
description: scBS-seq
meaning: EFO:0008905
EFO:0008904:
text: EFO:0008904
description: scATAC-seq (Microfluidics)
meaning: EFO:0008904
EFO:0010004:
text: EFO:0010004
description: SCRB-seq
meaning: EFO:0010004
EFO:0008919:
text: EFO:0008919
description: Seq-Well
meaning: EFO:0008919
EFO:0008925:
text: EFO:0008925
description: scATAC-seq (cell index)
meaning: EFO:0008925
EFO:0010010:
text: EFO:0010010
description: CEL-seq2
meaning: EFO:0010010
EFO:0008931:
text: EFO:0008931
description: Smart-seq2
meaning: EFO:0008931
EFO:0009294:
text: EFO:0009294
description: CITE-seq
meaning: EFO:0009294
EFO:0008930:
text: EFO:0008930
description: Smart-seq
meaning: EFO:0008930
EFO:0008953:
text: EFO:0008953
description: STRT-seq
meaning: EFO:0008953
EFO:0009901:
text: EFO:0009901
description: 10x 3' v1
meaning: EFO:0009901
EFO:0009900:
text: EFO:0009900
description: 10x 5' v2
meaning: EFO:0009900
EFO:0004187:
text: EFO:0004187
description: cDNA library construction
meaning: EFO:0004187
EFO:0010058:
text: EFO:0010058
description: Fluidigm C1-based library preparation
meaning: EFO:0010058
EFO:0009919:
text: EFO:0009919
description: SPLiT-seq
meaning: EFO:0009919
EFO:0008995:
text: EFO:0008995
description: 10x technology
meaning: EFO:0008995
EFO:0011025:
text: EFO:0011025
description: 10x 5' v1
meaning: EFO:0011025
EFO:0008720:
text: EFO:0008720
description: DroNc-seq
meaning: EFO:0008720
EFO:0009922:
text: EFO:0009922
description: 10x 3' v3
meaning: EFO:0009922
EFO:0009920:
text: EFO:0009920
description: Slide-seq
meaning: EFO:0009920
EFO:0008722:
text: EFO:0008722
description: Drop-seq
meaning: EFO:0008722
EFO:0008736:
text: EFO:0008736
description: Fast-ATAC
meaning: EFO:0008736
EFO:0010961:
text: EFO:0010961
description: Visium Spatial Gene Expression
meaning: EFO:0010961
EFO:0010964:
text: EFO:0010964
description: barcoded plate-based single cell RNA-seq
meaning: EFO:0010964
EFO:0008780:
text: EFO:0008780
description: inDrop
meaning: EFO:0008780
EFO:0009979:
text: EFO:0009979
description: single cell Hi-C
meaning: EFO:0009979
EFO:0008796:
text: EFO:0008796
description: MARS-seq
meaning: EFO:0008796
EFO:0010714:
text: EFO:0010714
description: 10x TCR enrichment
meaning: EFO:0010714
EFO:0010713:
text: EFO:0010713
description: 10x immune profiling
meaning: EFO:0010713
EFO:0010715:
text: EFO:0010715
description: 10x Ig enrichment
meaning: EFO:0010715
EFO:0010550:
text: EFO:0010550
description: sci-RNA-seq
meaning: EFO:0010550
EFO:0010172:
text: EFO:0010172
description: DNA library construction
meaning: EFO:0010172
EFO:0010184:
text: EFO:0010184
description: Smart-like
meaning: EFO:0010184
EFO:0010183:
text: EFO:0010183
description: single cell library construction
meaning: EFO:0010183
EFO:0008877:
text: EFO:0008877
description: Quartz-seq
meaning: EFO:0008877
EFO:0030026:
text: EFO:0030026
description: sci-Plex
meaning: EFO:0030026
EFO:0030027:
text: EFO:0030027
description: snmC-Seq2
meaning: EFO:0030027
EFO:0030028:
text: EFO:0030028
description: sci-RNA-seq3
meaning: EFO:0030028
EFO:0030029:
text: EFO:0030029
description: NanoString digital spatial profiling
meaning: EFO:0030029
EFO:0030031:
text: EFO:0030031
description: SCOPE-chip
meaning: EFO:0030031
EFO:0008679:
text: EFO:0008679
description: CEL-seq
meaning: EFO:0008679
EFO:0030001:
text: EFO:0030001
description: sci-CAR
meaning: EFO:0030001
EFO:0030002:
text: EFO:0030002
description: microwell-seq
meaning: EFO:0030002
EFO:0030003:
text: EFO:0030003
description: 10x 3' transcription profiling
meaning: EFO:0030003
EFO:0030004:
text: EFO:0030004
description: 10x 5' transcription profiling
meaning: EFO:0030004
EFO:0030007:
text: EFO:0030007
description: 10x scATAC-seq
meaning: EFO:0030007
EFO:0030008:
text: EFO:0030008
description: CITE-seq (cell surface protein profiling)
meaning: EFO:0030008
EFO:0030009:
text: EFO:0030009
description: CITE-seq (sample multiplexing)
meaning: EFO:0030009
EFO:0030010:
text: EFO:0030010
description: 10x feature profiling
meaning: EFO:0030010
EFO:0030011:
text: EFO:0030011
description: 10x feature barcode (cell surface protein profiling)
meaning: EFO:0030011
EFO:0030012:
text: EFO:0030012
description: 10x feature barcode (sample multiplexing)
meaning: EFO:0030012
EFO:0030013:
text: EFO:0030013
description: 10x feature barcode (CRISPR screening)
meaning: EFO:0030013
EFO:0009899:
text: EFO:0009899
description: 10x 3' v2
meaning: EFO:0009899
EFO:0030019:
text: EFO:0030019
description: Seq-Well S3
meaning: EFO:0030019
EFO:0030021:
text: EFO:0030021
description: Nx1-seq
meaning: EFO:0030021
EFO:0030074:
text: EFO:0030074
description: SORT-seq
meaning: EFO:0030074
EFO:0030077:
text: EFO:0030077
description: cell hashing
meaning: EFO:0030077
EFO:0030078:
text: EFO:0030078
description: droplet-based single-cell RNA library preparation
meaning: EFO:0030078
EFO:0030080:
text: EFO:0030080
description: 10x transcription profiling
meaning: EFO:0030080
EFO:0010891:
text: EFO:0010891
description: scATAC-seq
meaning: EFO:0010891
EFO:0030059:
text: EFO:0030059
description: 10x multiome
meaning: EFO:0030059
EFO:0030060:
text: EFO:0030060
description: mCT-seq
meaning: EFO:0030060
EFO:0030061:
text: EFO:0030061
description: mcSCRB-seq
meaning: EFO:0030061
EFO:0030062:
text: EFO:0030062
description: Slide-seqV2
meaning: EFO:0030062
classes:
LibraryConstructionOntology:
attributes:
describedBy:
description: The URL reference to the schema.
schema_version:
description: The version number of the schema in major.minor.patch format.
text:
description: The name of a library construction approach being used.
title: Library construction
required: true
ontology:
description: An ontology term identifier in the form prefix:accession.
title: Library construction ontology ID
range: LibraryConstructionOntology_ontology_options
ontology_label:
description: The preferred label for the ontology term referred to in the
ontology field. This may differ from the user-supplied value in the text
field.
title: Library construction ontology label