-
Notifications
You must be signed in to change notification settings - Fork 0
/
model_search_log.txt
440 lines (413 loc) · 16.3 KB
/
model_search_log.txt
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
Call:
glm(formula = desert ~ CTA_counts + vacant_counts, family = "binomial",
data = model_data)
Deviance Residuals:
Min 1Q Median 3Q Max
-0.9772 -0.5019 -0.3356 -0.1993 3.3938
Coefficients:
Estimate Std. Error z value Pr(>|z|)
(Intercept) -1.338e+00 3.102e-02 -43.12 <2e-16 ***
CTA_counts -3.053e-04 7.756e-06 -39.36 <2e-16 ***
vacant_counts 8.445e-04 3.629e-05 23.27 <2e-16 ***
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
(Dispersion parameter for binomial family taken to be 1)
Null deviance: 22117 on 36869 degrees of freedom
Residual deviance: 19828 on 36867 degrees of freedom
AIC: 19834
Number of Fisher Scoring iterations: 6
Call:
glm(formula = desert ~ CTA_counts + vacant_counts + Neighborhood,
family = "binomial", data = model_data)
Deviance Residuals:
Min 1Q Median 3Q Max
-2.3113 -0.3079 -0.0001 0.0000 3.7257
Coefficients:
Estimate Std. Error z value Pr(>|z|)
(Intercept) -1.942e+01 7.577e+02 -0.026 0.980
CTA_counts -1.507e-04 1.170e-05 -12.878 <2e-16 ***
vacant_counts -8.379e-04 7.794e-05 -10.751 <2e-16 ***
NeighborhoodArcher Heights -3.791e-01 1.447e+03 0.000 1.000
NeighborhoodArmour Square 1.795e+01 7.577e+02 0.024 0.981
NeighborhoodAshburn 1.831e+01 7.577e+02 0.024 0.981
NeighborhoodAuburn Gresham 1.414e+01 7.577e+02 0.019 0.985
NeighborhoodAustin 1.695e+01 7.577e+02 0.022 0.982
NeighborhoodAvalon Park 1.601e+01 7.577e+02 0.021 0.983
NeighborhoodAvondale 4.660e-01 1.121e+03 0.000 1.000
NeighborhoodBelmont Cragin -2.318e-01 9.511e+02 0.000 1.000
NeighborhoodBeverly 1.698e+01 7.577e+02 0.022 0.982
NeighborhoodBridgeport 1.618e+01 7.577e+02 0.021 0.983
NeighborhoodBrighton Park -2.943e-01 1.090e+03 0.000 1.000
NeighborhoodBurnside -1.995e-02 2.107e+03 0.000 1.000
NeighborhoodCalumet Heights 1.550e+01 7.577e+02 0.020 0.984
NeighborhoodChatham 1.762e+01 7.577e+02 0.023 0.981
NeighborhoodChicago Lawn 1.760e+01 7.577e+02 0.023 0.981
NeighborhoodClearing 2.015e+01 7.577e+02 0.027 0.979
NeighborhoodDouglas 2.638e-01 1.789e+03 0.000 1.000
NeighborhoodDunning 1.840e+01 7.577e+02 0.024 0.981
NeighborhoodEast Side -9.499e-01 1.161e+03 -0.001 0.999
NeighborhoodEdgewater 2.897e-01 1.092e+03 0.000 1.000
NeighborhoodEdison Park 1.637e+01 7.577e+02 0.022 0.983
NeighborhoodEnglewood 1.968e+01 7.577e+02 0.026 0.979
NeighborhoodForest Glen 1.780e+01 7.577e+02 0.023 0.981
NeighborhoodFuller Park 1.846e+01 7.577e+02 0.024 0.981
NeighborhoodGage Park -3.810e-02 1.117e+03 0.000 1.000
NeighborhoodGarfield Park 2.042e+01 7.577e+02 0.027 0.979
NeighborhoodGarfield Ridge 1.838e+01 7.577e+02 0.024 0.981
NeighborhoodGrand Boulevard 1.823e+01 7.577e+02 0.024 0.981
NeighborhoodGreater Grand Crossing 1.174e+00 1.060e+03 0.001 0.999
NeighborhoodHegewisch 2.202e+01 7.577e+02 0.029 0.977
NeighborhoodHermosa -9.721e-02 1.319e+03 0.000 1.000
NeighborhoodHumboldt Park 1.438e+01 7.577e+02 0.019 0.985
NeighborhoodHyde Park 3.205e-01 1.586e+03 0.000 1.000
NeighborhoodIrving Park -4.502e-02 1.001e+03 0.000 1.000
NeighborhoodJefferson Park -6.284e-01 1.084e+03 -0.001 1.000
NeighborhoodKenwood 1.392e-01 1.833e+03 0.000 1.000
NeighborhoodLake View 5.526e-01 9.975e+02 0.001 1.000
NeighborhoodLincoln Park 2.953e-01 1.092e+03 0.000 1.000
NeighborhoodLincoln Square 1.509e-01 1.087e+03 0.000 1.000
NeighborhoodLogan Square 3.683e-01 9.290e+02 0.000 1.000
NeighborhoodLoop 4.566e+00 1.623e+03 0.003 0.998
NeighborhoodLower West Side -1.938e-01 1.142e+03 0.000 1.000
NeighborhoodMcKinley Park -4.424e-01 1.387e+03 0.000 1.000
NeighborhoodMontclaire -6.408e-01 1.429e+03 0.000 1.000
NeighborhoodMorgan Park 1.430e+01 7.577e+02 0.019 0.985
NeighborhoodMount Greenwood -1.030e+00 1.241e+03 -0.001 0.999
NeighborhoodNear North Side 1.297e+00 1.065e+03 0.001 0.999
NeighborhoodNear South Side 2.229e-01 1.646e+03 0.000 1.000
NeighborhoodNear West Side 1.981e+01 7.577e+02 0.026 0.979
NeighborhoodNew City 1.754e+01 7.577e+02 0.023 0.982
NeighborhoodNorth Center 2.745e-02 1.073e+03 0.000 1.000
NeighborhoodNorth Lawndale 2.014e+01 7.577e+02 0.027 0.979
NeighborhoodNorth Park -5.248e-01 1.315e+03 0.000 1.000
NeighborhoodNorwood Park 1.584e+01 7.577e+02 0.021 0.983
NeighborhoodOakland -3.464e-01 2.337e+03 0.000 1.000
NeighborhoodO'Hare 1.737e+01 7.577e+02 0.023 0.982
NeighborhoodPortage Park 1.701e+01 7.577e+02 0.022 0.982
NeighborhoodPullman 2.048e+01 7.577e+02 0.027 0.978
NeighborhoodRiverdale -9.043e-01 2.643e+03 0.000 1.000
NeighborhoodRogers Park -1.622e-01 1.141e+03 0.000 1.000
NeighborhoodRoseland 2.112e+01 7.577e+02 0.028 0.978
NeighborhoodSouth Chicago 4.672e-01 1.067e+03 0.000 1.000
NeighborhoodSouth Deering 1.845e+01 7.577e+02 0.024 0.981
NeighborhoodSouth Lawndale -8.053e-02 1.039e+03 0.000 1.000
NeighborhoodSouth Shore 1.492e+01 7.577e+02 0.020 0.984
NeighborhoodUptown 8.181e-01 1.291e+03 0.001 0.999
NeighborhoodWashington Heights 1.733e+01 7.577e+02 0.023 0.982
NeighborhoodWashington Park 1.983e+01 7.577e+02 0.026 0.979
NeighborhoodWest Elsdon -3.509e-01 1.288e+03 0.000 1.000
NeighborhoodWest Lawn 1.805e+01 7.577e+02 0.024 0.981
NeighborhoodWest Pullman 2.041e+01 7.577e+02 0.027 0.979
NeighborhoodWest Ridge 1.843e+01 7.577e+02 0.024 0.981
NeighborhoodWest Town 5.568e-01 9.418e+02 0.001 1.000
NeighborhoodWoodlawn 1.745e+01 7.577e+02 0.023 0.982
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
(Dispersion parameter for binomial family taken to be 1)
Null deviance: 22117 on 36869 degrees of freedom
Residual deviance: 12833 on 36793 degrees of freedom
AIC: 12987
Number of Fisher Scoring iterations: 19
Generalized linear mixed model fit by maximum likelihood (Laplace
Approximation) [glmerMod]
Family: binomial ( logit )
Formula: desert ~ CTA_counts + vacant_counts + (1 | Neighborhood)
Data: model_data
AIC BIC logLik deviance df.resid
13156.6 13190.6 -6574.3 13148.6 36866
Scaled residuals:
Min 1Q Median 3Q Max
-3.621 -0.220 -0.025 -0.014 32.033
Random effects:
Groups Name Variance Std.Dev.
Neighborhood (Intercept) 15.93 3.991
Number of obs: 36870, groups: Neighborhood, 75
Fixed effects:
Estimate Std. Error z value Pr(>|z|)
(Intercept) -5.039e+00 6.580e-01 -7.658 1.89e-14 ***
CTA_counts -1.528e-04 1.167e-05 -13.093 < 2e-16 ***
vacant_counts -8.288e-04 7.792e-05 -10.637 < 2e-16 ***
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
Correlation of Fixed Effects:
(Intr) CTA_cn
CTA_counts -0.106
vacant_cnts -0.029 0.061
fit warnings:
Some predictor variables are on very different scales: consider rescaling
convergence code: 0
Model failed to converge with max|grad| = 0.459833 (tol = 0.001, component 1)
Model is nearly unidentifiable: very large eigenvalue
- Rescale variables?
Model is nearly unidentifiable: large eigenvalue ratio
- Rescale variables?
Diabetes.related NHB_p NHW_p HISP_p
Diabetes.related 1.0000000 0.6920375 -0.66904546 -0.19956024
NHB_p 0.6920375 1.0000000 -0.72322444 -0.60656903
NHW_p -0.6690455 -0.7232244 1.00000000 -0.08329904
HISP_p -0.1995602 -0.6065690 -0.08329904 1.00000000
PER.CAPITA.INCOME -0.5311231 -0.4134438 0.77318759 -0.28250282
PER.CAPITA.INCOME
Diabetes.related -0.5311231
NHB_p -0.4134438
NHW_p 0.7731876
HISP_p -0.2825028
PER.CAPITA.INCOME 1.0000000
Generalized linear mixed model fit by maximum likelihood (Laplace
Approximation) [glmerMod]
Family: binomial ( logit )
Formula: desert ~ CTA_counts + vacant_counts + Gonorrhea.in.Females +
Cancer..All.Sites. + TOTAL.POPULATION + NHAS + Dependency +
Childhood.Lead.Poisoning + Prenatal.Care.Beginning.in.First.Trimester +
Gonorrhea.in.Males + NHAM_p + Multiple.Race.. + Stroke..Cerebrovascular.Disease. +
Firearm.related + Tuberculosis + NHW_p + Teen.Birth.Rate +
No.High.School.Diploma + Lung.Cancer + (1 | Neighborhood)
Data: model_data_scale
AIC BIC logLik deviance df.resid
10903.2 11079.0 -5430.6 10861.2 31895
Scaled residuals:
Min 1Q Median 3Q Max
-1.583 -0.220 -0.027 -0.007 52.606
Random effects:
Groups Name Variance Std.Dev.
Neighborhood (Intercept) 1.659 1.288
Number of obs: 31916, groups: Neighborhood, 61
Fixed effects:
Estimate Std. Error z value Pr(>|z|)
(Intercept) -6.04389 0.43100 -14.023 < 2e-16
CTA_counts -0.57036 0.05995 -9.514 < 2e-16
vacant_counts -0.37881 0.03749 -10.103 < 2e-16
Gonorrhea.in.Females -3.75424 1.00762 -3.726 0.000195
Cancer..All.Sites. -0.38926 0.96506 -0.403 0.686684
TOTAL.POPULATION -0.13080 0.04953 -2.641 0.008268
NHAS 1.55942 0.37469 4.162 3.16e-05
Dependency 3.67987 0.70804 5.197 2.02e-07
Childhood.Lead.Poisoning -2.02847 0.39449 -5.142 2.72e-07
Prenatal.Care.Beginning.in.First.Trimester 2.73538 0.56364 4.853 1.22e-06
Gonorrhea.in.Males 2.78710 0.86146 3.235 0.001215
NHAM_p -2.02641 0.46288 -4.378 1.20e-05
Multiple.Race.. 2.78784 0.71371 3.906 9.38e-05
Stroke..Cerebrovascular.Disease. 1.97571 0.50931 3.879 0.000105
Firearm.related 1.87312 0.78146 2.397 0.016532
Tuberculosis 0.94905 0.28908 3.283 0.001027
NHW_p 0.95131 0.77969 1.220 0.222421
Teen.Birth.Rate 3.29780 0.91654 3.598 0.000321
No.High.School.Diploma -2.12871 0.75498 -2.820 0.004809
Lung.Cancer 1.31915 0.79116 1.667 0.095442
(Intercept) ***
CTA_counts ***
vacant_counts ***
Gonorrhea.in.Females ***
Cancer..All.Sites.
TOTAL.POPULATION **
NHAS ***
Dependency ***
Childhood.Lead.Poisoning ***
Prenatal.Care.Beginning.in.First.Trimester ***
Gonorrhea.in.Males **
NHAM_p ***
Multiple.Race.. ***
Stroke..Cerebrovascular.Disease. ***
Firearm.related *
Tuberculosis **
NHW_p
Teen.Birth.Rate ***
No.High.School.Diploma **
Lung.Cancer .
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
convergence code: 0
Model failed to converge with max|grad| = 0.0662357 (tol = 0.001, component 1)
failure to converge in 10000 evaluations
[1] "fitting: 1"
[1] "fitting: 2"
[1] "fitting: 3"
[1] "fitting: 4"
[1] "fitting: 5"
[1] "fitting: 7"
[1] "fitting: 6"
[1] "fitting: 8"
[1] "fitting: 9"
[1] "fitting: 10"
[1] "fitting: 11"
[1] "fitting: 12"
[1] "fitting: 13"
[1] "fitting: 14"
[1] "fitting: 15"
[1] "fitting: 16"
[1] "fitting: 17"
[1] "fitting: 18"
[1] "fitting: 19"
[1] "fitting: 22"
[1] "fitting: 20"
[1] "fitting: 24"
[1] "fitting: 21"
[1] "fitting: 25"
[1] "fitting: 23"
[1] "fitting: 27"
[1] "fitting: 26"
[1][1] "fitting: 29"
"fitting: 30"
[1] "fitting: 28"
[1] "fitting: 31"
[1][1] "fitting: 32" "fitting: 33"
[1] "ADDING: Colorectal.Cancer"
[1] 7.00 10903.27
[1] "fitting: 1"
[1] "fitting: 2"
[1] "fitting: 3"
[1] "fitting: 4"
[1] "fitting: 5"
[1] "fitting: 6"
[1] "fitting: 7"
[1] "fitting: 8"
[1] "fitting: 9"
[1] "fitting: 10"
[1] "fitting: 11"
[1] "fitting: 12"
[1][1] "fitting: 14"
"fitting: 13"
[1] "fitting: 15"
[1] "fitting: 16"
[1] "fitting: 17"
[1] "fitting: 18"
[1] "fitting: 19"
[1] "fitting: 23"
[1] "fitting: 22"
[1][1] "fitting: 24"
"fitting: 20"
[1] "fitting: 21"
[1] "fitting: 25"
[1] "fitting: 26"
[1] "fitting: 27"
[1] "fitting: 28"
[1] "fitting: 29"
[1] "fitting: 30"
[1] "fitting: 31"
[1] "fitting: 32"
[1] "ADDING: HISP_p"
[1] 31.00 10902.28
[1] "fitting: 1"
[1] "fitting: 2"
[1] "fitting: 3"
[1] "fitting: 4"
[1] "fitting: 5"
[1] "fitting: 6"
[1] "fitting: 7"
[1] "fitting: 8"
[1] "fitting: 9"
[1] "fitting: 10"
[1] "fitting: 11"
[1] "fitting: 12"
[1] "fitting: 14"
[1] "fitting: 13"
[1] "fitting: 15"
[1] "fitting: 16"
[1] "fitting: 17"
[1] "fitting: 18"
[1] "fitting: 19"
[1][1][1] "fitting: 22"
"fitting: 20"
[1] "fitting: 21"
"fitting: 23"
[1][1] "fitting: 24"
"fitting: 25"
[1] "fitting: 26"
[1] "fitting: 27"
[1] "fitting: 28"
[1] "fitting: 29"
[1] "fitting: 30"
[1] "fitting: 31"
[1] "ADDING: Below.Poverty.Level"
[1] 11.00 10899.04
[1] "fitting: 1"
[1] "fitting: 2"
[1] "fitting: 3"
[1] "fitting: 4"
[1] "fitting: 5"
[1] "fitting: 6"
[1] "fitting: 7"
[1] "fitting: 8"
[1] "fitting: 9"
[1] "fitting: 10"
[1] "fitting: 11"
[1] "fitting: 12"
[1] "fitting: 14"
[1] "fitting: 13"
[1] "fitting: 15"
[1] "fitting: 16"
[1] "fitting: 17"
[1][1] "fitting: 20"
"fitting: 18"
[1] "fitting: 19"
[1] "fitting: 21"
[1] "fitting: 23"
[1] "fitting: 22"
[1] "fitting: 25"
[1] "fitting: 24"
[1] "fitting: 27"
[1] "fitting: 28"
[1] "fitting: 26"
[1] "fitting: 29"
[1] "fitting: 30"
[1] "ADDING: Breast.cancer.in.females"
[1] 6.00 10895.49
[1] "fitting: 1"
[1] "fitting: 2"
[1] "fitting: 3"
[1] "fitting: 4"
[1] "fitting: 5"
[1] "fitting: 6"
[1] "fitting: 7"
[1] "fitting: 8"
[1] "fitting: 9"
[1] "fitting: 10"
[1] "fitting: 11"
[1] "fitting: 14"
[1] "fitting: 12"
[1] "fitting: 13"
[1] "fitting: 15"
[1] "fitting: 16"
[1] "fitting: 17"
[1] "fitting: 18"
[1] "fitting: 19"
[1] "fitting: 20"
[1] "fitting: 25"
[1] "fitting: 21"[1]
[1] "fitting: 26"
"fitting: 22"
[1][1] "fitting: 27"
"fitting: 23"
[1][1] "fitting: 28"
"fitting: 24"
[1] "fitting: 29"
[1] "ADDING: NHAM"
[1] 22.00 10892.26
[1] "fitting: 1"
[1] "fitting: 2"
[1] "fitting: 3"
[1] "fitting: 4"
[1] "fitting: 5"
[1] "fitting: 6"
[1] "fitting: 7"
[1] "fitting: 8"
[1] "fitting: 9"
[1] "fitting: 10"
[1] "fitting: 11"
[1] "fitting: 12"
[1] "fitting: 13"
[1] "fitting: 14"
[1] "fitting: 15"
[1] "fitting: 16"
[1] "fitting: 17"
[1] "fitting: 18"
[1] "fitting: 20"
[1] "fitting: 19"
[1] "fitting: 21"
[1] "fitting: 22"
[1] "fitting: 24"
[1] "fitting: 23"
[1] "fitting: 25"
[1] "fitting: 26"
[1] "fitting: 27"
[1] "fitting: 28"