diff --git a/CITATION.cff b/CITATION.cff index 7cda8f28a..e67afd5dd 100644 --- a/CITATION.cff +++ b/CITATION.cff @@ -9,6 +9,10 @@ type: software license: MIT title: 'EpiNow2: Estimate Real-Time Case Counts and Time-Varying Epidemiological Parameters' version: 1.5.2.9000 +doi: 10.32614/CRAN.package.EpiNow2 +identifiers: +- type: url + value: https://epiforecasts.io/EpiNow2/dev/ abstract: Estimates the time-varying reproduction number, rate of spread, and doubling time using a range of open-source tools (Abbott et al. (2020) ), and current best practices (Gostic et al. (2020) ). @@ -89,6 +93,19 @@ references: email: michellang@gmail.com orcid: https://orcid.org/0000-0001-9754-0393 year: '2024' + doi: 10.32614/CRAN.package.checkmate +- type: software + title: cli + abstract: 'cli: Helpers for Developing Command Line Interfaces' + notes: Imports + url: https://cli.r-lib.org + repository: https://CRAN.R-project.org/package=cli + authors: + - family-names: Csárdi + given-names: Gábor + email: csardi.gabor@gmail.com + year: '2024' + doi: 10.32614/CRAN.package.cli - type: software title: data.table abstract: 'data.table: Extension of `data.frame`' @@ -99,6 +116,7 @@ references: - family-names: Barrett given-names: Tyson email: t.barrett88@gmail.com + orcid: https://orcid.org/0000-0002-2137-1391 - family-names: Dowle given-names: Matt email: mattjdowle@gmail.com @@ -109,10 +127,15 @@ references: given-names: Jan - family-names: Chirico given-names: Michael + orcid: https://orcid.org/0000-0003-0787-087X - family-names: Hocking given-names: Toby orcid: https://orcid.org/0000-0002-3146-0865 + - family-names: Schwendinger + given-names: Benjamin + orcid: https://orcid.org/0000-0003-3315-8114 year: '2024' + doi: 10.32614/CRAN.package.data.table - type: software title: futile.logger abstract: 'futile.logger: A Logging Utility for R' @@ -122,6 +145,7 @@ references: - family-names: Rowe given-names: Brian Lee Yung year: '2024' + doi: 10.32614/CRAN.package.futile.logger version: '>= 1.4' - type: software title: future @@ -135,6 +159,7 @@ references: email: henrikb@braju.com orcid: https://orcid.org/0000-0002-7579-5165 year: '2024' + doi: 10.32614/CRAN.package.future - type: software title: future.apply abstract: 'future.apply: Apply Function to Elements in Parallel using Futures' @@ -147,6 +172,7 @@ references: email: henrikb@braju.com orcid: https://orcid.org/0000-0002-7579-5165 year: '2024' + doi: 10.32614/CRAN.package.future.apply - type: software title: ggplot2 abstract: 'ggplot2: Create Elegant Data Visualisations Using the Grammar of Graphics' @@ -186,6 +212,7 @@ references: name-particle: van den orcid: https://orcid.org/0000-0002-9335-7468 year: '2024' + doi: 10.32614/CRAN.package.ggplot2 - type: software title: lifecycle abstract: 'lifecycle: Manage the Life Cycle of your Package Functions' @@ -201,6 +228,7 @@ references: email: hadley@posit.co orcid: https://orcid.org/0000-0003-4757-117X year: '2024' + doi: 10.32614/CRAN.package.lifecycle - type: software title: lubridate abstract: 'lubridate: Make Dealing with Dates a Little Easier' @@ -216,6 +244,7 @@ references: - family-names: Wickham given-names: Hadley year: '2024' + doi: 10.32614/CRAN.package.lubridate - type: software title: methods abstract: 'R: A Language and Environment for Statistical Computing' @@ -238,6 +267,7 @@ references: email: thomasp85@gmail.com orcid: https://orcid.org/0000-0002-5147-4711 year: '2024' + doi: 10.32614/CRAN.package.patchwork - type: software title: posterior abstract: 'posterior: Tools for Working with Posterior Distributions' @@ -258,6 +288,7 @@ references: given-names: Aki email: Aki.Vehtari@aalto.fi year: '2024' + doi: 10.32614/CRAN.package.posterior - type: software title: progressr abstract: 'progressr: An Inclusive, Unifying API for Progress Updates' @@ -269,6 +300,7 @@ references: given-names: Henrik email: henrikb@braju.com year: '2024' + doi: 10.32614/CRAN.package.progressr - type: software title: purrr abstract: 'purrr: Functional Programming Tools' @@ -284,6 +316,7 @@ references: given-names: Lionel email: lionel@rstudio.com year: '2024' + doi: 10.32614/CRAN.package.purrr - type: software title: R.utils abstract: 'R.utils: Various Programming Utilities' @@ -295,6 +328,7 @@ references: given-names: Henrik email: henrikb@braju.com year: '2024' + doi: 10.32614/CRAN.package.R.utils version: '>= 2.0.0' - type: software title: Rcpp @@ -322,6 +356,7 @@ references: - family-names: Chambers given-names: John year: '2024' + doi: 10.32614/CRAN.package.Rcpp version: '>= 0.12.0' - type: software title: rlang @@ -337,6 +372,7 @@ references: given-names: Hadley email: hadley@posit.co year: '2024' + doi: 10.32614/CRAN.package.rlang version: '>= 0.4.7' - type: software title: rstan @@ -365,6 +401,7 @@ references: email: badr@jhu.edu orcid: https://orcid.org/0000-0002-9808-2344 year: '2024' + doi: 10.32614/CRAN.package.rstan version: '>= 2.26.0' - type: software title: rstantools @@ -385,6 +422,7 @@ references: - family-names: Johnson given-names: Andrew year: '2024' + doi: 10.32614/CRAN.package.rstantools version: '>= 2.2.0' - type: software title: runner @@ -398,6 +436,7 @@ references: email: dawid.kaledkowski@gmail.com orcid: https://orcid.org/0000-0001-9533-457X year: '2024' + doi: 10.32614/CRAN.package.runner - type: software title: scales abstract: 'scales: Scale Functions for Visualization' @@ -415,6 +454,7 @@ references: - family-names: Seidel given-names: Dana year: '2024' + doi: 10.32614/CRAN.package.scales - type: software title: stats abstract: 'R: A Language and Environment for Statistical Computing' @@ -442,6 +482,7 @@ references: - family-names: Bornkamp given-names: Björn year: '2024' + doi: 10.32614/CRAN.package.truncnorm - type: software title: utils abstract: 'R: A Language and Environment for Statistical Computing' @@ -472,17 +513,6 @@ references: - family-names: Bronder given-names: Steve year: '2024' -- type: software - title: covr - abstract: 'covr: Test Coverage for Packages' - notes: Suggests - url: https://covr.r-lib.org - repository: https://CRAN.R-project.org/package=covr - authors: - - family-names: Hester - given-names: Jim - email: james.f.hester@gmail.com - year: '2024' - type: software title: knitr abstract: 'knitr: A General-Purpose Package for Dynamic Report Generation in R' @@ -495,6 +525,7 @@ references: email: xie@yihui.name orcid: https://orcid.org/0000-0003-0645-5666 year: '2024' + doi: 10.32614/CRAN.package.knitr - type: software title: rmarkdown abstract: 'rmarkdown: Dynamic Documents for R' @@ -538,6 +569,7 @@ references: email: rich@posit.co orcid: https://orcid.org/0000-0003-3925-190X year: '2024' + doi: 10.32614/CRAN.package.rmarkdown - type: software title: testthat abstract: 'testthat: Unit Testing for R' @@ -549,6 +581,7 @@ references: given-names: Hadley email: hadley@posit.co year: '2024' + doi: 10.32614/CRAN.package.testthat - type: software title: withr abstract: 'withr: Run Code ''With'' Temporarily Modified Global State' @@ -573,6 +606,7 @@ references: - family-names: Chang given-names: Winston year: '2024' + doi: 10.32614/CRAN.package.withr - type: software title: BH abstract: 'BH: Boost C++ Header Files' @@ -587,6 +621,7 @@ references: - family-names: Kane given-names: Michael J. year: '2024' + doi: 10.32614/CRAN.package.BH version: '>= 1.66.0' - type: software title: RcppEigen @@ -597,14 +632,20 @@ references: repository: https://CRAN.R-project.org/package=RcppEigen authors: - family-names: Bates - given-names: Douglas + given-names: Doug + orcid: https://orcid.org/0000-0001-8316-9503 - family-names: Eddelbuettel given-names: Dirk + email: edd@debian.org + orcid: https://orcid.org/0000-0001-6419-907X - family-names: Francois given-names: Romain - - family-names: Eigen - given-names: Yixuan Qiu; the authors of Eigen for the included version of + orcid: https://orcid.org/0000-0002-2444-4226 + - family-names: Qiu + given-names: Yixuan + orcid: https://orcid.org/0000-0003-0109-6692 year: '2024' + doi: 10.32614/CRAN.package.RcppEigen version: '>= 0.3.3.3.0' - type: software title: RcppParallel @@ -629,6 +670,7 @@ references: - name: Intel website: https://www.threadingbuildingblocks.org/ year: '2024' + doi: 10.32614/CRAN.package.RcppParallel version: '>= 5.0.1' - type: software title: StanHeaders @@ -687,8 +729,6 @@ references: email: badr@jhu.edu orcid: https://orcid.org/0000-0002-9808-2344 year: '2024' + doi: 10.32614/CRAN.package.StanHeaders version: '>= 2.26.0' -identifiers: -- type: url - value: https://epiforecasts.io/EpiNow2/dev/