Skip to content

Latest commit

 

History

History
55 lines (28 loc) · 1.66 KB

NEWS.md

File metadata and controls

55 lines (28 loc) · 1.66 KB
Raw

mirlyn 1.4.2

  • Fix bug in mirl() introduced in v1.4.1

mirlyn 1.4.1

  • Custom prefix name in asvrenamer.R

  • Don't forget user distance/similarity metric in betamatPCA()

  • Warn about dropped samples in mirl()

mirlyn 1.4.0

  • Significant speed increase for internal function repotu_df(), which should help functions which use rarefied objects with many samples and reps

mirlyn 1.3.1

  • Fixed plot_heat() function

mirlyn 1.3.0

  • Speed ups to alphadivDF() and betamatPCA()

  • Added set.seed and mc.cores options to alphacone()

mirlyn 1.2.2

  • Fixed another typo in README

  • Added an informative error message to betamatPCAvis() when the number of colours and/or reps is incorrect

mirlyn 1.2.1

  • Fixed typos in README

  • Fixed rng seed handling in rarefy_whole_rep() so that it is different when using multiple cores (note that this means the function is not reproducible between this version and previous ones)

mirlyn 1.2.0

  • Added a mc.cores option to mirl() (note that this change necessitated altering the behaviour of setting the random seed, so calls to the mirl() function will differ from 1.1.0 to 1.2.0)

  • Fixed broken examples for alphawichVis(), alphaconeVis()

  • General code, documentation cleanup

mirlyn 1.1.0

  • New function get_asv_table(): create an ASV table with abundance and taxonomy

  • New function phyloseq_to_df(): create a data.frame containing abundance, taxonomy and metadata from phyloseq objects

  • New function plot_heat(): create heatmaps visualizing relative abundance of a taxonmic group

  • New function randomseqsig(): determine whether a taxonomic group of interest is over/under-represented