README.md

BeeGenn

How to run

First, make sure to install GeNN and in particular pygenn.

Then, install this package.

https://github.com/giacThePhantom/genn-network-model/
cd genn-network-model
pip install -e .

Then, set up a simulation:

python -m beegenn.simulation data <simname>

Set up docker

If you wish to run docker locally, after checking out the project, install Docker and then proceed to build an image:

docker build . -t beegenn/beegenn:latest

Our entrypoint will automatically start a simulation in a hardened scenario. To get outputs you should bind-mount an output directory to /home/genn, and a data directory to /data. For example:

docker run -it \
  --mount type=bind,source=$(pwd)/data,target=/data \
  --mount type=bind,source=/some/output/folder,target=/home/genn \
  beegenn/beegenn:latest

Run inside the cluster

Please refer to our internal guide.

Authors

• Giacomo Fantoni (Giacomo.Fantoni@studenti.unitn.it)
• Enrico Trombetta (Enrico.Trombetta@studenti.unitn.it)