This repo provides code for the analysis of MINECRAFT-seq data corresponding to Baglaenko, et al, biorxiv, 2024.
Contact: Yuriy Baglaenko ybaglaen@broadinstitute.org, Michelle Curtis mcurtis11@bwh.harvard.edu
Contained in this repo are figures/analysis notebooks for each of the following experiments.
- PTEN
- PTEN_Analysis.ipynb
- FBXO11
- FBXO11_Analysis.ipynb
- DQB1
- DQB1_Analysis.ipynb
- DQB1_Heatmap.ipynb
- PTPRC
- PTPRC_Analysis.ipynb
- PTPRC_GSEA.ipynb
- RPL8
- RPL8_Analysis.ipynb
- IL2RA
- IL2RA_Analysis.ipynb
Sample data for the PTEN, FBXO11, and DQB1 experiments is located on Zenodo.