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I realized while QCing the datasets that the images in sct-testing-large name sub-nyuShepher... were also in ms-nyu. However, the ms-nyu dataset contains more images (the stiched images and the sagittal inferior images) and more subjects.
Also, json sidecars were created for the images in sct-testing-large.
Correction: most segmentation files are already in ms-nyu. The script I wrote verifies for each derivative file in sct-testing-large, if the corresponding file is in ms-nyu.
I realised while working on this, that several files had not been transfered from ~duke/mri/nyu/2017-shepherd.
The duke folder contains 610 files while the git annex repo contains 495 files.
This will have to be resolved in the future: opening issue #43
I realized while QCing the datasets that the images in sct-testing-large name
sub-nyuShepher...
were also inms-nyu
. However, thems-nyu
dataset contains more images (the stiched images and the sagittal inferior images) and more subjects.Also,
json
sidecars were created for the images insct-testing-large
.Example:
In
ms-nyu
:In
sct-testing-large
Tagging @jcohenadad so that you are aware of this
Note: I will have to move the segmentations (both SC and lesions).
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