diff --git a/endtoend-testing/pom.xml b/endtoend-testing/pom.xml index 370211bfa..a13a101fb 100644 --- a/endtoend-testing/pom.xml +++ b/endtoend-testing/pom.xml @@ -18,7 +18,6 @@ de.jplag cli ${revision} - test de.jplag diff --git a/endtoend-testing/src/main/java/de/jplag/endtoend/constants/TestDirectoryConstants.java b/endtoend-testing/src/main/java/de/jplag/endtoend/constants/TestDirectoryConstants.java index b0cd6a7ff..d1f21c0f9 100644 --- a/endtoend-testing/src/main/java/de/jplag/endtoend/constants/TestDirectoryConstants.java +++ b/endtoend-testing/src/main/java/de/jplag/endtoend/constants/TestDirectoryConstants.java @@ -12,18 +12,17 @@ private TestDirectoryConstants() { } /** - * Base path to the saved results + * Base path to the resources directory */ - public static final Path BASE_PATH_TO_RESULT_JSON = Path.of("src", "test", "resources", "results"); + public static final Path BASE_PATH_TO_RESOURCES = Path.of("src", "test", "resources"); /** - * Base path to the endToEnd testing resources + * Base path to the saved results */ - public static final Path BASE_PATH_TO_LANGUAGE_RESOURCES = Path.of("src", "test", "resources", "languageTestFiles"); + public static final Path BASE_PATH_TO_RESULT_JSON = BASE_PATH_TO_RESOURCES.resolve(Path.of("results")); /** - * Create the complete path to the submission files. Here the temporary system path is extended with the - * "SUBMISSION_DIRECTORY_NAME", which is predefined in this class. + * Base path to the data set descriptors */ - public static final Path TEMPORARY_SUBMISSION_DIRECTORY_NAME = Path.of("target", "testing-directory-submission"); + public static final Path BASE_PATH_TO_DATA_SET_DESCRIPTORS = BASE_PATH_TO_RESOURCES.resolve(Path.of("dataSets")); } diff --git a/endtoend-testing/src/main/java/de/jplag/endtoend/helper/FileHelper.java b/endtoend-testing/src/main/java/de/jplag/endtoend/helper/FileHelper.java index 06f3232e4..ffcff5b2e 100644 --- a/endtoend-testing/src/main/java/de/jplag/endtoend/helper/FileHelper.java +++ b/endtoend-testing/src/main/java/de/jplag/endtoend/helper/FileHelper.java @@ -1,12 +1,22 @@ package de.jplag.endtoend.helper; import java.io.File; +import java.io.FileOutputStream; import java.io.IOException; +import java.io.InputStream; +import java.io.OutputStream; +import java.util.Enumeration; +import java.util.zip.ZipEntry; +import java.util.zip.ZipFile; /** * Helper class to perform all necessary operations or functions on files or folders. */ public class FileHelper { + private static final int ZIP_THRESHOLD_ENTRIES = 100000; + private static final int ZIP_THRESHOLD_SIZE = 1000000000; + private static final double ZIP_THRESHOLD_RATIO = 10; + private static final String ZIP_BOMB_ERROR_MESSAGE = "Refusing to unzip file (%s), because it seems to be a fork bomb"; private FileHelper() { // private constructor to prevent instantiation @@ -52,4 +62,65 @@ public static void createFileIfItDoesNotExist(File file) throws IOException { private static String createNewIOExceptionStringForFileOrFOlderCreation(File file) { return "The file/folder at the location [" + file.toString() + "] could not be created!"; } -} + + /** + * Unzips a given zip file into a given directory. + * @param zip The zip file to extract + * @param targetDirectory The target directory + * @throws IOException If io operations go wrong + */ + public static void unzip(File zip, File targetDirectory) throws IOException { + try (ZipFile zipFile = new ZipFile(zip)) { + Enumeration entries = zipFile.entries(); + + long totalSizeArchive = 0; + long totalEntriesArchive = 0; + + while (entries.hasMoreElements()) { + totalEntriesArchive++; + + ZipEntry entry = entries.nextElement(); + File unzippedFile = new File(targetDirectory, entry.getName()).getCanonicalFile(); + + if (unzippedFile.getAbsolutePath().startsWith(targetDirectory.getAbsolutePath())) { + if (entry.isDirectory()) { + unzippedFile.mkdirs(); + } else { + unzippedFile.getParentFile().mkdirs(); + totalSizeArchive += extractZipElement(entry, zipFile, zip, unzippedFile); + } + } + + if (totalSizeArchive > ZIP_THRESHOLD_SIZE) { + throw new IllegalStateException(String.format(ZIP_BOMB_ERROR_MESSAGE, zip.getAbsolutePath())); + } + if (totalEntriesArchive > ZIP_THRESHOLD_ENTRIES) { + throw new IllegalStateException(String.format(ZIP_BOMB_ERROR_MESSAGE, zip.getAbsolutePath())); + } + } + } + } + + private static long extractZipElement(ZipEntry entry, ZipFile zipFile, File zip, File target) throws IOException { + long totalSizeEntry = 0; + + try (InputStream inputStream = zipFile.getInputStream(entry)) { + try (OutputStream outputStream = new FileOutputStream(target)) { + byte[] buffer = new byte[2048]; + int count; + while ((count = inputStream.read(buffer)) > 0) { + outputStream.write(buffer, 0, count); + + totalSizeEntry += count; + + double compressionRate = (double) totalSizeEntry / entry.getCompressedSize(); + if (compressionRate > ZIP_THRESHOLD_RATIO) { + throw new IllegalStateException(String.format(ZIP_BOMB_ERROR_MESSAGE, zip.getAbsolutePath())); + } + } + } + } + + return totalSizeEntry; + } +} \ No newline at end of file diff --git a/endtoend-testing/src/main/java/de/jplag/endtoend/helper/LanguageDeserializer.java b/endtoend-testing/src/main/java/de/jplag/endtoend/helper/LanguageDeserializer.java new file mode 100644 index 000000000..07848b72e --- /dev/null +++ b/endtoend-testing/src/main/java/de/jplag/endtoend/helper/LanguageDeserializer.java @@ -0,0 +1,21 @@ +package de.jplag.endtoend.helper; + +import java.io.IOException; + +import de.jplag.Language; +import de.jplag.cli.LanguageLoader; + +import com.fasterxml.jackson.core.JsonParser; +import com.fasterxml.jackson.databind.DeserializationContext; +import com.fasterxml.jackson.databind.JsonDeserializer; + +/** + * Deserialized a language from a json file + */ +public class LanguageDeserializer extends JsonDeserializer { + @Override + public Language deserialize(JsonParser jsonParser, DeserializationContext deserializationContext) throws IOException { + String name = jsonParser.getText(); + return LanguageLoader.getLanguage(name).orElseThrow(() -> new IllegalStateException(String.format("Language %s not found.", name))); + } +} diff --git a/endtoend-testing/src/main/java/de/jplag/endtoend/helper/TestSuiteHelper.java b/endtoend-testing/src/main/java/de/jplag/endtoend/helper/TestSuiteHelper.java index bc4c03050..200323ae2 100644 --- a/endtoend-testing/src/main/java/de/jplag/endtoend/helper/TestSuiteHelper.java +++ b/endtoend-testing/src/main/java/de/jplag/endtoend/helper/TestSuiteHelper.java @@ -1,13 +1,10 @@ package de.jplag.endtoend.helper; -import java.io.File; -import java.util.List; import java.util.stream.Collectors; +import java.util.stream.Stream; import de.jplag.JPlagComparison; -import de.jplag.Language; import de.jplag.Submission; -import de.jplag.endtoend.constants.TestDirectoryConstants; /** * Helper class to perform all necessary additional functions for the endToEnd tests. @@ -28,30 +25,8 @@ private TestSuiteHelper() { * @return unique identifier for test case recognition */ public static String getTestIdentifier(JPlagComparison jPlagComparison) { - return List.of(jPlagComparison.firstSubmission(), jPlagComparison.secondSubmission()).stream().map(Submission::getRoot) + return Stream.of(jPlagComparison.firstSubmission(), jPlagComparison.secondSubmission()).map(Submission::getRoot) .map(FileHelper::getFileNameWithoutFileExtension).sorted().collect(Collectors.joining("-")); } - - /** - * Returns the file pointing to the directory of the submissions for the given language and result json. The result - * json's name is expected to be equal to the test suite identifier. - * @param language is the language for the tests - * @param resultJSON is the json containing the expected values - * @return returns the directory of the submissions - */ - public static File getSubmissionDirectory(Language language, File resultJSON) { - return getSubmissionDirectory(language, FileHelper.getFileNameWithoutFileExtension(resultJSON)); - } - - /** - * Returns the file pointing to the directory of the submissions for the given language and test suite identifier as - * described in the Readme.md. - * @param language is the langauge for the tests - * @param testSuiteIdentifier is the test suite identifier of the tests - * @return returns the directory of the submissions - */ - public static File getSubmissionDirectory(Language language, String testSuiteIdentifier) { - return TestDirectoryConstants.BASE_PATH_TO_LANGUAGE_RESOURCES.resolve(language.getIdentifier()).resolve(testSuiteIdentifier).toFile(); - } } diff --git a/endtoend-testing/src/main/java/de/jplag/endtoend/helper/UnzipManager.java b/endtoend-testing/src/main/java/de/jplag/endtoend/helper/UnzipManager.java new file mode 100644 index 000000000..4c363d39c --- /dev/null +++ b/endtoend-testing/src/main/java/de/jplag/endtoend/helper/UnzipManager.java @@ -0,0 +1,59 @@ +package de.jplag.endtoend.helper; + +import java.io.File; +import java.io.IOException; +import java.nio.file.Files; +import java.nio.file.attribute.FileAttribute; +import java.nio.file.attribute.PosixFilePermission; +import java.nio.file.attribute.PosixFilePermissions; +import java.util.HashMap; +import java.util.Map; +import java.util.Set; +import java.util.logging.Logger; + +import org.apache.commons.lang3.SystemUtils; + +import de.jplag.endtoend.model.DataSet; + +public class UnzipManager { + private final Map unzippedFiles; + private static UnzipManager instance; + private final Logger logger = Logger.getLogger("Unzip Manager"); + + private static synchronized UnzipManager getInstance() { + if (instance == null) { + instance = new UnzipManager(); + } + + return instance; + } + + public static File unzipOrCache(DataSet dataSet, File zip) throws IOException { + return getInstance().unzipOrCacheInternal(dataSet, zip); + } + + private UnzipManager() { + this.unzippedFiles = new HashMap<>(); + } + + private File unzipOrCacheInternal(DataSet dataSet, File zip) throws IOException { + if (!unzippedFiles.containsKey(dataSet)) { + File target; + + if (SystemUtils.IS_OS_UNIX) { + FileAttribute> attr = PosixFilePermissions.asFileAttribute(PosixFilePermissions.fromString("rwx------")); + target = Files.createTempDirectory(zip.getName(), attr).toFile(); + } else { + target = Files.createTempDirectory(zip.getName()).toFile(); + if (!(target.setReadable(true, true) && target.setWritable(true, true) && target.setExecutable(true, true))) { + logger.warning("Could not set permissions for temp directory (" + target.getAbsolutePath() + ")."); + } + } + + FileHelper.unzip(zip, target); + this.unzippedFiles.put(dataSet, target); + } + + return this.unzippedFiles.get(dataSet); + } +} diff --git a/endtoend-testing/src/main/java/de/jplag/endtoend/model/ComparisonIdentifier.java b/endtoend-testing/src/main/java/de/jplag/endtoend/model/ComparisonIdentifier.java new file mode 100644 index 000000000..13760f56f --- /dev/null +++ b/endtoend-testing/src/main/java/de/jplag/endtoend/model/ComparisonIdentifier.java @@ -0,0 +1,57 @@ +package de.jplag.endtoend.model; + +import java.io.File; +import java.io.FileNotFoundException; +import java.util.HashSet; +import java.util.Scanner; +import java.util.Set; + +/** + * Identifier for a comparison. The order of the names does not matter + * @param firstName The first name + * @param secondName The second name + */ +public record ComparisonIdentifier(String firstName, String secondName) { + private static final String INVALID_LINE_ERROR_MESSAGE = "Comparison identifier file (%s) has an invalid line: %s"; + + @Override + public boolean equals(Object o) { + if (!(o instanceof ComparisonIdentifier other)) { + return false; + } + + return (firstName.equals(other.firstName) && secondName.equals(other.secondName)) + || (secondName.equals(other.firstName) && firstName.equals(other.secondName)); + } + + @Override + public int hashCode() { + return firstName.hashCode() + secondName.hashCode(); + } + + /** + * Loads the identifiers stored in a csv (semicolon separated) file. + * @param file The file to load + * @return The comparisons in the file + */ + public static Set loadIdentifiersFromFile(File file, String delimiter) { + try (Scanner scanner = new Scanner(file)) { + Set identifiers = new HashSet<>(); + while (scanner.hasNextLine()) { + String[] parts = scanner.nextLine().split(delimiter); + if (parts.length != 2) { + throw new IllegalStateException(String.format(INVALID_LINE_ERROR_MESSAGE, file.getAbsolutePath(), String.join(delimiter, parts))); + } + identifiers.add(new ComparisonIdentifier(parts[0], parts[1])); + } + return identifiers; + } catch (FileNotFoundException e) { + throw new IllegalStateException(String.format("Comparisons could not be loaded for %s.", file.getName()), e); + } + } + + @Override + public String toString() { + return firstName + " - " + secondName; + } +} diff --git a/endtoend-testing/src/main/java/de/jplag/endtoend/model/DataSet.java b/endtoend-testing/src/main/java/de/jplag/endtoend/model/DataSet.java new file mode 100644 index 000000000..8c4bf91ff --- /dev/null +++ b/endtoend-testing/src/main/java/de/jplag/endtoend/model/DataSet.java @@ -0,0 +1,105 @@ +package de.jplag.endtoend.model; + +import java.io.File; +import java.io.IOException; +import java.util.HashSet; +import java.util.Objects; +import java.util.Optional; +import java.util.Set; + +import de.jplag.Language; +import de.jplag.endtoend.constants.TestDirectoryConstants; +import de.jplag.endtoend.helper.LanguageDeserializer; +import de.jplag.endtoend.helper.UnzipManager; + +import com.fasterxml.jackson.annotation.JsonProperty; +import com.fasterxml.jackson.databind.annotation.JsonDeserialize; + +/** + * Represents a data set for the endToEnd test suite. + * @param name The name of the data set + * @param language The language + * @param format The format + * @param sourceLocation The source directory, may be null + * @param resultFile The result file name, may be null + * @param goldStandardFile The gold standard file, may be null + * @param options The options for the jplag runs, may be null + */ +public record DataSet(@JsonProperty(required = true) String name, + @JsonDeserialize(using = LanguageDeserializer.class) @JsonProperty(required = true) Language language, + @JsonProperty(required = true) DataSetFormat format, @JsonProperty String sourceLocation, @JsonProperty StorageFormat storageFormat, + @JsonProperty String resultFile, @JsonProperty String goldStandardFile, @JsonProperty String goldStandardDelimiter, + @JsonProperty Options options) { + + private static final String DEFAULT_GOLD_STANDARD_DELIMITER = ";"; + private static final String DEFAULT_SOURCE_DIRECTORY = "data/%s"; + private static final String DEFAULT_SOURCE_ZIP = "data/%s.zip"; + private static final String DEFAULT_RESULT_FILE_NAME = "%s.json"; + + /** + * Gets the source directories + * @return The source directories + */ + public Set getSourceDirectories() throws IOException { + return new HashSet<>(format.getSourceDirectories(this)); + } + + /** + * Helper function replacing null by the default value + * @return The source directory + */ + File actualSourceDirectory() throws IOException { + StorageFormat actualStorageFormat = storageFormat == null ? StorageFormat.DIRECTORY : storageFormat; + + if (actualStorageFormat == StorageFormat.DIRECTORY) { + String location = sourceLocation; + if (location == null) { + location = String.format(DEFAULT_SOURCE_DIRECTORY, this.name); + } + return new File(TestDirectoryConstants.BASE_PATH_TO_RESOURCES.toFile(), location); + } else if (actualStorageFormat == StorageFormat.ZIP) { + String location = sourceLocation; + if (location == null) { + location = String.format(DEFAULT_SOURCE_ZIP, this.name); + } + return UnzipManager.unzipOrCache(this, new File(TestDirectoryConstants.BASE_PATH_TO_RESOURCES.toFile(), location)); + } + + throw new IllegalStateException(); + } + + /** + * Helper function replacing null by the default value + * @return The result file + */ + public File getResultFile() { + if (resultFile == null) { + return new File(TestDirectoryConstants.BASE_PATH_TO_RESULT_JSON.toFile(), String.format(DEFAULT_RESULT_FILE_NAME, this.name)); + } else { + return new File(TestDirectoryConstants.BASE_PATH_TO_RESULT_JSON.toFile(), resultFile); + } + } + + /** + * @return The gold standard file as an optional. + */ + public Optional getGoldStandardFile() throws IOException { + File actualSourceDirectory = this.actualSourceDirectory(); + return Optional.ofNullable(this.goldStandardFile).map(name -> new File(actualSourceDirectory, name)); + } + + /** + * Helper function replacing null by the default value. + * @return The options + */ + public Options getOptions() { + return Objects.requireNonNullElseGet(this.options, Options::new); + } + + /** + * Returns the actual delimiter, replacing null by the default value + */ + public String getActualDelimiter() { + return Objects.requireNonNullElse(this.goldStandardDelimiter, DEFAULT_GOLD_STANDARD_DELIMITER); + } +} diff --git a/endtoend-testing/src/main/java/de/jplag/endtoend/model/DataSetFormat.java b/endtoend-testing/src/main/java/de/jplag/endtoend/model/DataSetFormat.java new file mode 100644 index 000000000..a3c312928 --- /dev/null +++ b/endtoend-testing/src/main/java/de/jplag/endtoend/model/DataSetFormat.java @@ -0,0 +1,56 @@ +package de.jplag.endtoend.model; + +import java.io.File; +import java.io.IOException; +import java.util.Collections; +import java.util.Set; + +/** + * The available formats for data sets. + */ +@SuppressWarnings("unused") // The formats only referred to from the data set configuration +public enum DataSetFormat { + /** + * The progpedia format + */ + PROGPEDIA { + @Override + public Set getSourceDirectories(DataSet dataSet) throws IOException { + return Collections.singleton(new File(dataSet.actualSourceDirectory(), "ACCEPTED")); + } + + @Override + public File getBaseCodeDirectory(DataSet dataSet, String directoryName) throws IOException { + return new File(dataSet.actualSourceDirectory(), directoryName); + } + }, + /** + * Plain format where the submissions are flat within the source directory. + */ + PLAIN { + @Override + public Set getSourceDirectories(DataSet dataSet) throws IOException { + return Collections.singleton(dataSet.actualSourceDirectory()); + } + + @Override + public File getBaseCodeDirectory(DataSet dataSet, String directoryName) { + throw new IllegalStateException("Plain formatted data sets cannot include base code."); + } + }; + + /** + * Resolved the source directories for jplag + * @param dataSet The data set + * @return The source directories + */ + public abstract Set getSourceDirectories(DataSet dataSet) throws IOException; + + /** + * Resolves the base code directory + * @param dataSet The data set + * @param directoryName The name of the base code directory + * @return The base code directory + */ + public abstract File getBaseCodeDirectory(DataSet dataSet, String directoryName) throws IOException; +} diff --git a/endtoend-testing/src/main/java/de/jplag/endtoend/model/DataSetRunConfiguration.java b/endtoend-testing/src/main/java/de/jplag/endtoend/model/DataSetRunConfiguration.java new file mode 100644 index 000000000..2e0f59013 --- /dev/null +++ b/endtoend-testing/src/main/java/de/jplag/endtoend/model/DataSetRunConfiguration.java @@ -0,0 +1,40 @@ +package de.jplag.endtoend.model; + +import java.io.File; +import java.io.IOException; +import java.util.ArrayList; +import java.util.List; +import java.util.Set; + +import de.jplag.options.JPlagOptions; + +/** + * A run configuration for the end-to-end tests + * @param jPlagOptions The jplag options to use + * @param identifier The identifier for the configuration + */ +public record DataSetRunConfiguration(JPlagOptions jPlagOptions, String identifier) { + private static final String IDENTIFIER_FORMAT = "MTM: %s"; + + /** + * Builds all configurations for a data set + * @param dataSet The data set + * @return The configurations + */ + public static List generateRunConfigurations(DataSet dataSet) throws IOException { + Options configuredOptions = dataSet.getOptions(); + List result = new ArrayList<>(); + + for (int minimumTokenMatch : configuredOptions.getMinimumTokenMatches()) { + JPlagOptions options = new JPlagOptions(dataSet.language(), dataSet.getSourceDirectories(), Set.of()); + options = options.withMinimumTokenMatch(minimumTokenMatch); + if (configuredOptions.baseCodeDirectory() != null) { + File baseCode = dataSet.format().getBaseCodeDirectory(dataSet, configuredOptions.baseCodeDirectory()); + options = options.withBaseCodeSubmissionDirectory(baseCode); + } + result.add(new DataSetRunConfiguration(options, String.format(IDENTIFIER_FORMAT, minimumTokenMatch))); + } + + return result; + } +} diff --git a/endtoend-testing/src/main/java/de/jplag/endtoend/model/ExpectedResult.java b/endtoend-testing/src/main/java/de/jplag/endtoend/model/ExpectedResult.java index 8d1d95aac..ff2408adb 100644 --- a/endtoend-testing/src/main/java/de/jplag/endtoend/model/ExpectedResult.java +++ b/endtoend-testing/src/main/java/de/jplag/endtoend/model/ExpectedResult.java @@ -1,13 +1,14 @@ package de.jplag.endtoend.model; +import de.jplag.JPlagComparison; import de.jplag.options.SimilarityMetric; import com.fasterxml.jackson.annotation.JsonProperty; /** * contains the current comparative values for the endToEnd tests. The comparative values were determined by discussion - * which can be found at https://github.com/jplag/JPlag/issues/548 Here this object is used for serialization and - * deserialization of the information from json to object or object to json. + * which can be found at GitHub.Here this object is used for + * serialization and deserialization of the information from json to object or object to json. */ public record ExpectedResult(@JsonProperty("minimal_similarity") double resultSimilarityMinimum, @JsonProperty("maximum_similarity") double resultSimilarityMaximum, @JsonProperty("matched_token_number") int resultMatchedTokenNumber) { @@ -23,8 +24,15 @@ public double getSimilarityForMetric(SimilarityMetric metric) { case MIN -> resultSimilarityMinimum(); case MAX -> resultSimilarityMaximum(); case INTERSECTION -> resultMatchedTokenNumber(); - default -> throw new IllegalArgumentException("Metric not supported!"); }; } + /** + * Creates an expected result from a comparison + * @param comparison The comparison + * @return The expected result + */ + public static ExpectedResult fromComparison(JPlagComparison comparison) { + return new ExpectedResult(comparison.minimalSimilarity(), comparison.maximalSimilarity(), comparison.getNumberOfMatchedTokens()); + } } diff --git a/endtoend-testing/src/main/java/de/jplag/endtoend/model/GoldStandard.java b/endtoend-testing/src/main/java/de/jplag/endtoend/model/GoldStandard.java new file mode 100644 index 000000000..60afa0d0f --- /dev/null +++ b/endtoend-testing/src/main/java/de/jplag/endtoend/model/GoldStandard.java @@ -0,0 +1,33 @@ +package de.jplag.endtoend.model; + +import java.util.Collection; +import java.util.DoubleSummaryStatistics; +import java.util.Set; + +import de.jplag.JPlagComparison; + +import com.fasterxml.jackson.annotation.JsonProperty; + +/** + * The data for the gold standard. + * @param matchAverage The average similarity of all submission in the gold standard + * @param nonMatchAverage The average similarity of all submission outside the gold standard + */ +public record GoldStandard(@JsonProperty double matchAverage, @JsonProperty double nonMatchAverage) { + public static GoldStandard buildFromComparisons(Collection comparisonList, Set comparisonIdentifiers) { + DoubleSummaryStatistics match = new DoubleSummaryStatistics(); + DoubleSummaryStatistics nonMatch = new DoubleSummaryStatistics(); + + for (JPlagComparison comparison : comparisonList) { + ComparisonIdentifier comparisonIdentifier = new ComparisonIdentifier(comparison.firstSubmission().getName(), + comparison.secondSubmission().getName()); + if (comparisonIdentifiers.contains(comparisonIdentifier)) { + match.accept(comparison.similarity()); + } else { + nonMatch.accept(comparison.similarity()); + } + } + + return new GoldStandard(match.getAverage(), nonMatch.getAverage()); + } +} diff --git a/endtoend-testing/src/main/java/de/jplag/endtoend/model/Options.java b/endtoend-testing/src/main/java/de/jplag/endtoend/model/Options.java index a6fcbf10c..651f7d5bb 100644 --- a/endtoend-testing/src/main/java/de/jplag/endtoend/model/Options.java +++ b/endtoend-testing/src/main/java/de/jplag/endtoend/model/Options.java @@ -1,10 +1,63 @@ package de.jplag.endtoend.model; +import java.util.Arrays; +import java.util.Objects; + import com.fasterxml.jackson.annotation.JsonProperty; /** - * The object contains required options for the endToEndt tests which are important for the test suite. The options were - * determined by discussion which can be found at https://github.com/jplag/JPlag/issues/590. + * The object contains required options for the endToEnd tests which are important for the test suite. */ -public record Options(@JsonProperty("minimum_token_match") Integer minimumTokenMatch) { +public record Options(@JsonProperty Integer[] minimumTokenMatches, @JsonProperty String baseCodeDirectory) { + + private static final int[] defaultTokenMatches = new int[] {3, 9}; + + /** + * Initializes a new options object with minimumTokenMatch and baseCodeDirectory both being null + */ + public Options() { + this(null, null); + } + + /** + * Builds the list of all token matches that should be checked. That means all values from minimumTokenMatches and the + * default values (3 and 9) + * @return The values + */ + public int[] getMinimumTokenMatches() { + Integer[] configuredValues = minimumTokenMatches; + if (configuredValues == null) { + configuredValues = new Integer[0]; + } + + int[] values = new int[configuredValues.length + defaultTokenMatches.length]; + System.arraycopy(defaultTokenMatches, 0, values, 0, defaultTokenMatches.length); + for (int i = 0; i < configuredValues.length; i++) { + values[defaultTokenMatches.length + i] = configuredValues[i]; + } + + return values; + } + + @Override + public boolean equals(Object o) { + if (this == o) + return true; + if (o == null || getClass() != o.getClass()) + return false; + Options options = (Options) o; + return Arrays.equals(minimumTokenMatches, options.minimumTokenMatches) && Objects.equals(baseCodeDirectory, options.baseCodeDirectory); + } + + @Override + public int hashCode() { + int result = Objects.hash(baseCodeDirectory); + result = 31 * result + Arrays.hashCode(minimumTokenMatches); + return result; + } + + @Override + public String toString() { + return "Options{" + "minimumTokenMatches=" + Arrays.toString(minimumTokenMatches) + ", baseCodeDirectory='" + baseCodeDirectory + '\'' + '}'; + } } diff --git a/endtoend-testing/src/main/java/de/jplag/endtoend/model/ResultDescription.java b/endtoend-testing/src/main/java/de/jplag/endtoend/model/ResultDescription.java index e5935f9f4..81ebc6627 100644 --- a/endtoend-testing/src/main/java/de/jplag/endtoend/model/ResultDescription.java +++ b/endtoend-testing/src/main/java/de/jplag/endtoend/model/ResultDescription.java @@ -2,7 +2,6 @@ import java.util.Map; -import com.fasterxml.jackson.annotation.JsonIgnore; import com.fasterxml.jackson.annotation.JsonProperty; /** @@ -10,6 +9,6 @@ * data and its results for each possible option specified. this is important both for serializing the data into json * format and for deserialization. */ -public record ResultDescription(@JsonIgnore String languageIdentifier, @JsonProperty("options") Options options, - @JsonProperty("tests") Map identifierToResultMap) { +public record ResultDescription(@JsonProperty String identifier, @JsonProperty("tests") Map identifierToResultMap, + @JsonProperty GoldStandard goldStandard) { } \ No newline at end of file diff --git a/endtoend-testing/src/main/java/de/jplag/endtoend/model/StorageFormat.java b/endtoend-testing/src/main/java/de/jplag/endtoend/model/StorageFormat.java new file mode 100644 index 000000000..ad60f2c32 --- /dev/null +++ b/endtoend-testing/src/main/java/de/jplag/endtoend/model/StorageFormat.java @@ -0,0 +1,6 @@ +package de.jplag.endtoend.model; + +public enum StorageFormat { + DIRECTORY, + ZIP +} diff --git a/endtoend-testing/src/test/java/de/jplag/endtoend/EndToEndGeneratorTest.java b/endtoend-testing/src/test/java/de/jplag/endtoend/EndToEndGeneratorTest.java index 2e8c4f0df..7d66b3274 100644 --- a/endtoend-testing/src/test/java/de/jplag/endtoend/EndToEndGeneratorTest.java +++ b/endtoend-testing/src/test/java/de/jplag/endtoend/EndToEndGeneratorTest.java @@ -5,7 +5,6 @@ import java.util.ArrayList; import java.util.List; import java.util.Map; -import java.util.Set; import java.util.stream.Collectors; import org.junit.jupiter.api.Disabled; @@ -16,13 +15,14 @@ import de.jplag.JPlag; import de.jplag.JPlagComparison; import de.jplag.JPlagResult; -import de.jplag.Language; -import de.jplag.cli.LanguageLoader; import de.jplag.endtoend.constants.TestDirectoryConstants; import de.jplag.endtoend.helper.FileHelper; import de.jplag.endtoend.helper.TestSuiteHelper; +import de.jplag.endtoend.model.ComparisonIdentifier; +import de.jplag.endtoend.model.DataSet; +import de.jplag.endtoend.model.DataSetRunConfiguration; import de.jplag.endtoend.model.ExpectedResult; -import de.jplag.endtoend.model.Options; +import de.jplag.endtoend.model.GoldStandard; import de.jplag.endtoend.model.ResultDescription; import de.jplag.exceptions.ExitException; import de.jplag.options.JPlagOptions; @@ -32,54 +32,54 @@ /** * Test class for automatically generating the json file describing the expected results. To generate a result json, - * adapt the three constants to your requirements and enable the test case. + * adapt the DATA_SET constant. */ class EndToEndGeneratorTest { - private static final String LANGUAGE_IDENTIFIER = "java"; - private static final String TEST_SUITE_IDENTIFIER = "sortAlgo"; - private static final List OPTIONS = List.of(new Options(3), new Options(9)); + private static final String DATA_SET = "progpedia"; private static final Logger logger = LoggerFactory.getLogger(EndToEndGeneratorTest.class); @Disabled("only enable to generate result json file") @Test void generateResultJson() throws ExitException, IOException { - Language language = LanguageLoader.getLanguage(LANGUAGE_IDENTIFIER).orElseThrow(); - File submissionDirectory = TestSuiteHelper.getSubmissionDirectory(language, TEST_SUITE_IDENTIFIER); + DataSet dataSet = new ObjectMapper() + .readValue(new File(TestDirectoryConstants.BASE_PATH_TO_DATA_SET_DESCRIPTORS.toFile(), DATA_SET + ".json"), DataSet.class); List resultDescriptions = new ArrayList<>(); - for (var option : OPTIONS) { - JPlagOptions options = new JPlagOptions(language, Set.of(submissionDirectory), Set.of()) - .withMinimumTokenMatch(option.minimumTokenMatch()); - JPlagResult jplagResult = JPlag.run(options); - List jPlagComparisons = jplagResult.getAllComparisons(); - Map expectedResults = jPlagComparisons.stream() - .collect(Collectors.toMap(TestSuiteHelper::getTestIdentifier, comparison -> new ExpectedResult(comparison.minimalSimilarity(), - comparison.maximalSimilarity(), comparison.getNumberOfMatchedTokens()))); - resultDescriptions.add(new ResultDescription(language.getIdentifier(), option, expectedResults)); + + for (DataSetRunConfiguration runConfiguration : DataSetRunConfiguration.generateRunConfigurations(dataSet)) { + JPlagOptions options = runConfiguration.jPlagOptions(); + JPlagResult result = JPlag.run(options); + List comparisons = result.getAllComparisons(); + Map expectedResults = comparisons.stream() + .collect(Collectors.toMap(TestSuiteHelper::getTestIdentifier, ExpectedResult::fromComparison)); + + GoldStandard goldStandard = null; + if (dataSet.getGoldStandardFile().isPresent()) { + goldStandard = GoldStandard.buildFromComparisons(comparisons, + ComparisonIdentifier.loadIdentifiersFromFile(dataSet.getGoldStandardFile().get(), dataSet.getActualDelimiter())); + } + + resultDescriptions.add(new ResultDescription(runConfiguration.identifier(), expectedResults, goldStandard)); } - File outputFile = writeJsonModelsToJsonFile(resultDescriptions, TEST_SUITE_IDENTIFIER, LANGUAGE_IDENTIFIER); + + File outputFile = writeJsonModelsToJsonFile(resultDescriptions, dataSet); logger.info("result JSON written to file '{}'", outputFile); } /** * Saves the passed object as a json file to the file identified by the test suite and language. Returns that file. * @param resultDescriptions list of elements to be saved - * @param testSuiteIdentifier identifier of the test suite - * @param languageIdentifier identifier of the language - * @throws IOException Signals that an I/O exception of some sort has occurred. Thisclass is the general class of + * @param dataSet The data set the elements are for + * @throws IOException Signals that an I/O exception, of some sort, has occurred. Thisclass is the general class of * exceptions produced by failed orinterrupted I/O operations. */ - private static File writeJsonModelsToJsonFile(List resultDescriptions, String testSuiteIdentifier, String languageIdentifier) - throws IOException { + private static File writeJsonModelsToJsonFile(List resultDescriptions, DataSet dataSet) throws IOException { ObjectWriter writer = new ObjectMapper().writer().withDefaultPrettyPrinter(); - File outputFile = TestDirectoryConstants.TEMPORARY_SUBMISSION_DIRECTORY_NAME.resolve(languageIdentifier) - .resolve(testSuiteIdentifier + ".json").toFile(); + File outputFile = dataSet.getResultFile(); FileHelper.createDirectoryIfItDoesNotExist(outputFile.getParentFile()); FileHelper.createFileIfItDoesNotExist(outputFile); - // convert book object to JSON file - writer.writeValue(outputFile, resultDescriptions.toArray()); return outputFile; diff --git a/endtoend-testing/src/test/java/de/jplag/endtoend/EndToEndSuiteTest.java b/endtoend-testing/src/test/java/de/jplag/endtoend/EndToEndSuiteTest.java index c5ffa4cb3..30bb375b6 100644 --- a/endtoend-testing/src/test/java/de/jplag/endtoend/EndToEndSuiteTest.java +++ b/endtoend-testing/src/test/java/de/jplag/endtoend/EndToEndSuiteTest.java @@ -14,12 +14,17 @@ import java.util.Arrays; import java.util.Collection; import java.util.DoubleSummaryStatistics; +import java.util.HashMap; import java.util.LinkedList; import java.util.List; +import java.util.Map; +import java.util.Objects; import java.util.Set; import java.util.stream.Collectors; +import org.junit.jupiter.api.Assumptions; import org.junit.jupiter.api.DynamicContainer; +import org.junit.jupiter.api.DynamicNode; import org.junit.jupiter.api.DynamicTest; import org.junit.jupiter.api.TestFactory; @@ -27,12 +32,16 @@ import de.jplag.JPlagComparison; import de.jplag.JPlagResult; import de.jplag.Language; -import de.jplag.cli.LanguageLoader; +import de.jplag.Submission; import de.jplag.endtoend.constants.TestDirectoryConstants; import de.jplag.endtoend.helper.DeltaSummaryStatistics; import de.jplag.endtoend.helper.FileHelper; import de.jplag.endtoend.helper.TestSuiteHelper; +import de.jplag.endtoend.model.ComparisonIdentifier; +import de.jplag.endtoend.model.DataSet; +import de.jplag.endtoend.model.DataSetRunConfiguration; import de.jplag.endtoend.model.ExpectedResult; +import de.jplag.endtoend.model.GoldStandard; import de.jplag.endtoend.model.ResultDescription; import de.jplag.exceptions.ExitException; import de.jplag.options.JPlagOptions; @@ -46,66 +55,106 @@ * previous ones stored in the resource folder. */ class EndToEndSuiteTest { - private static final double EPSILON = 1E-8; + private static final double EPSILON = 1E-6; /** * Creates the test cases over all language options for which data is available and the current test options. * @return dynamic test cases across all test data and languages - * @throws IOException is thrown for all problems that may occur while parsing the json file. + * @throws ExitException If JPlag throws an error */ @TestFactory - Collection endToEndTestFactory() throws ExitException { - File resultDirectory = TestDirectoryConstants.BASE_PATH_TO_RESULT_JSON.toFile(); - List languageDirectories = Arrays.asList(resultDirectory.listFiles(File::isDirectory)); + Collection endToEndTestFactory() throws ExitException, IOException { + File descriptorDirectory = TestDirectoryConstants.BASE_PATH_TO_DATA_SET_DESCRIPTORS.toFile(); + List testDescriptorFiles = Arrays.asList(Objects.requireNonNull(descriptorDirectory.listFiles())); List allTests = new ArrayList<>(); - for (File languageDirectory : languageDirectories) { - allTests.add(generateTestForLanguage(languageDirectory)); + + Map> dataSetsByLanguage = testDescriptorFiles.stream().map(testDescriptorFile -> { + try { + return new ObjectMapper().readValue(testDescriptorFile, DataSet.class); + } catch (IOException e) { + throw new IllegalStateException("The test descriptor " + testDescriptorFile.getName() + " is invalid."); + } + }).collect(Collectors.groupingBy(DataSet::language)); + + for (Language language : dataSetsByLanguage.keySet()) { + allTests.add(generateTestForLanguage(language, dataSetsByLanguage.get(language))); } + return allTests; } - private DynamicContainer generateTestForLanguage(File languageDirectory) throws ExitException { - Language language = LanguageLoader.getLanguage(languageDirectory.getName()).orElseThrow(); - File[] resultJsons = languageDirectory.listFiles(file -> !file.isDirectory() && file.getName().endsWith(".json")); + /** + * Generates the tests for the given language + * @param language The language + * @param dataSets The data sets for this language + * @return The dynamic container containing the tests + * @throws ExitException If JPlag throws an error + */ + private DynamicContainer generateTestForLanguage(Language language, List dataSets) throws ExitException, IOException { List languageTests = new LinkedList<>(); - for (File resultJson : resultJsons) { // for each data set - languageTests.add(generateTestsForDataSet(language, resultJson)); + for (DataSet dataSet : dataSets) { + languageTests.add(generateTestsForDataSet(dataSet)); } return DynamicContainer.dynamicContainer(language.getIdentifier(), languageTests); } - private DynamicContainer generateTestsForDataSet(Language language, File resultJson) throws ExitException { + /** + * Generates tests for a data set + * @param dataSet The data set + * @return The dynamic container containing the tests + * @throws ExitException If JPlag throws an error + */ + private DynamicContainer generateTestsForDataSet(DataSet dataSet) throws ExitException, IOException { List testContainers = new LinkedList<>(); - ResultDescription[] results; + Map results = new HashMap<>(); try { - results = new ObjectMapper().readValue(resultJson, ResultDescription[].class); + ResultDescription[] resultList = new ObjectMapper().readValue(dataSet.getResultFile(), ResultDescription[].class); + for (ResultDescription resultDescription : resultList) { + results.put(resultDescription.identifier(), resultDescription); + } } catch (IOException exception) { throw new IllegalStateException("Could not load expected values.", exception); } - for (var result : results) { // for each configuration - var testCases = generateTestsForResultDescription(resultJson, result, language); - testContainers.add(DynamicContainer.dynamicContainer("MTM: " + result.options().minimumTokenMatch(), testCases)); + + for (DataSetRunConfiguration runConfiguration : DataSetRunConfiguration.generateRunConfigurations(dataSet)) { + if (!results.containsKey(runConfiguration.identifier())) { + throw new IllegalStateException("Expected results don't match data set configuration"); + } + testContainers.add(generateTestsForResultDescription(results.get(runConfiguration.identifier()), dataSet, runConfiguration)); } - return DynamicContainer.dynamicContainer(FileHelper.getFileNameWithoutFileExtension(resultJson), testContainers); + + return DynamicContainer.dynamicContainer(FileHelper.getFileNameWithoutFileExtension(dataSet.getResultFile()), testContainers); } /** * Generates test cases for each test described in the provided result object. - * @param resultJson is the file of the result json * @param result is one test suite configuration of the deserialized {@code resultJson} - * @param language is the language to run JPlag with + * @param dataSet The data set, the test is for + * @param runConfiguration The run configuration for the test * @return a collection of test cases, each validating one {@link JPlagResult} against its {@link ExpectedResult} * counterpart + * @throws ExitException If JPlag throw an error */ - private Collection generateTestsForResultDescription(File resultJson, ResultDescription result, Language language) - throws ExitException { - File submissionDirectory = TestSuiteHelper.getSubmissionDirectory(language, resultJson); - JPlagOptions options = new JPlagOptions(language, Set.of(submissionDirectory), Set.of()) - .withMinimumTokenMatch(result.options().minimumTokenMatch()); + private DynamicContainer generateTestsForResultDescription(ResultDescription result, DataSet dataSet, DataSetRunConfiguration runConfiguration) + throws ExitException, IOException { + JPlagOptions options = runConfiguration.jPlagOptions(); JPlagResult jplagResult = JPlag.run(options); - var comparisons = jplagResult.getAllComparisons().stream().collect(Collectors.toMap(it -> TestSuiteHelper.getTestIdentifier(it), it -> it)); + var comparisons = jplagResult.getAllComparisons().stream().collect(Collectors.toMap(TestSuiteHelper::getTestIdentifier, it -> it)); assertEquals(result.identifierToResultMap().size(), comparisons.size(), "different number of results and expected results"); + DynamicContainer comparisonTests = generateTestResultsForComparisons(result, comparisons); + DynamicNode detectionTest = generateGoldStandardTest(dataSet, comparisons, result.goldStandard()); + + return DynamicContainer.dynamicContainer(runConfiguration.identifier(), List.of(comparisonTests, detectionTest)); + } + + /** + * Generates the test cases for the individual comparisons + * @param result The result description for the tests + * @param comparisons The comparisons + * @return The container with the tests + */ + private DynamicContainer generateTestResultsForComparisons(ResultDescription result, Map comparisons) { DeltaSummaryStatistics statistics = new DeltaSummaryStatistics(); var tests = new ArrayList<>(result.identifierToResultMap().keySet().stream().map(identifier -> { JPlagComparison comparison = comparisons.get(identifier); @@ -113,7 +162,8 @@ private Collection generateTestsForResultDescription(File resultJso return generateTest(identifier, expectedResult, comparison, statistics); }).toList()); tests.addAll(evaluateDeviationOfSimilarity(statistics)); - return tests; + + return DynamicContainer.dynamicContainer("comparison changes", tests); } /** @@ -137,29 +187,65 @@ private DynamicTest generateTest(String name, ExpectedResult expectedResult, JPl if (expectedResult.resultMatchedTokenNumber() != result.getNumberOfMatchedTokens()) { errors.add(formattedValidationError(INTERSECTION, expectedResult.resultMatchedTokenNumber(), result.getNumberOfMatchedTokens())); } - assertTrue(errors.isEmpty(), createValidationErrorOutput(name, errors)); + assertTrue(errors.isEmpty(), createValidationErrorOutput(name, errors, result)); }); } + /** + * Generates the tests for the gold standard + * @param dataSet The data set + * @param comparisonMap The comparisons + * @param goldStandard The gold standard previously saved + * @return The node containing the tests + */ + private DynamicNode generateGoldStandardTest(DataSet dataSet, Map comparisonMap, GoldStandard goldStandard) + throws IOException { + if (goldStandard != null) { + Set goldStandardIdentifiers = ComparisonIdentifier + .loadIdentifiersFromFile(dataSet.getGoldStandardFile().orElseThrow(), dataSet.getActualDelimiter()); + GoldStandard found = GoldStandard.buildFromComparisons(comparisonMap.values(), goldStandardIdentifiers); + + DynamicTest goldStandardMatch = DynamicTest.dynamicTest("expected plagiarism comparisons average similarity", + () -> assertEquals(goldStandard.matchAverage(), found.matchAverage(), EPSILON, + "expected plagiarism comparisons have deviating similarities")); + + DynamicTest goldStandardNonMatch = DynamicTest.dynamicTest("expected non plagiarism comparisons average", + () -> assertEquals(goldStandard.nonMatchAverage(), found.nonMatchAverage(), EPSILON, + "expected non plagiarism comparisons have deviating similarities")); + + return DynamicContainer.dynamicContainer("expected plagiarism test", List.of(goldStandardMatch, goldStandardNonMatch)); + } else { + return DynamicTest.dynamicTest("expected plagiarisms skipped", + () -> Assumptions.abort("The expected plagiarisms test is skipped, because no expected plagiarisms are defined.")); + } + } + /** * Creates the display message for a result value validation error. - * @param valueName Name of the failed test object + * @param metric The metric the test failed for * @param actualValue actual test value * @param expectedValue expected test value */ private String formattedValidationError(SimilarityMetric metric, Number actualValue, Number expectedValue) { - return metric + " was " + String.valueOf(actualValue) + " but expected " + String.valueOf(expectedValue); + return metric + " was " + actualValue + " but expected " + expectedValue; } /** * Creates the display info from the passed failed test results * @return formatted text for the failed comparative values of the current test */ - private String createValidationErrorOutput(String name, List validationErrors) { + private String createValidationErrorOutput(String name, List validationErrors, JPlagComparison result) { return name + ": There were " + validationErrors.size() + " validation error(s):" + System.lineSeparator() - + String.join(System.lineSeparator(), validationErrors); + + String.join(System.lineSeparator(), validationErrors) + System.lineSeparator() + "First file tokens: " + + String.join(",", getTokenNames(result.firstSubmission())) + System.lineSeparator() + "Second file tokens: " + + String.join(",", getTokenNames(result.secondSubmission())); } + /** + * Creates the tests for the average deviation + * @param deltaStatistics The deltas + * @return The list of tests + */ private List evaluateDeviationOfSimilarity(DeltaSummaryStatistics deltaStatistics) { return List.of(deviationOfSimilarityTest("positive", deltaStatistics.getPositiveStatistics()), deviationOfSimilarityTest("negative", deltaStatistics.getNegativeStatistics())); @@ -168,8 +254,18 @@ private List evaluateDeviationOfSimilarity(DeltaSummaryStatistics d private DynamicTest deviationOfSimilarityTest(String textualSign, DoubleSummaryStatistics statistics) { return DynamicTest.dynamicTest("OVERVIEW: " + textualSign + " similarity deviation", () -> { if (Math.abs(statistics.getAverage()) > EPSILON) { - fail(textualSign + " deviation over all AVG similarity values:" + System.lineSeparator() + statistics.toString()); + fail(textualSign + " deviation over all AVG similarity values:" + System.lineSeparator() + statistics); } }); } + + private List getTokenNames(Submission submission) { + return submission.getTokenList().stream().map(it -> { + if (Enum.class.isAssignableFrom(it.getType().getClass())) { + return ((Enum) it.getType()).name(); + } else { + return it.getType().getDescription(); + } + }).toList(); + } } diff --git a/endtoend-testing/src/test/resources/data/progpedia.zip b/endtoend-testing/src/test/resources/data/progpedia.zip new file mode 100644 index 000000000..1fa74c527 Binary files /dev/null and b/endtoend-testing/src/test/resources/data/progpedia.zip differ diff --git a/endtoend-testing/src/test/resources/languageTestFiles/java/sortAlgo/SortAlgo.java b/endtoend-testing/src/test/resources/data/sortAlgo/SortAlgo.java similarity index 100% rename from endtoend-testing/src/test/resources/languageTestFiles/java/sortAlgo/SortAlgo.java rename to endtoend-testing/src/test/resources/data/sortAlgo/SortAlgo.java diff --git a/endtoend-testing/src/test/resources/languageTestFiles/java/sortAlgo/SortAlgo1.java b/endtoend-testing/src/test/resources/data/sortAlgo/SortAlgo1.java similarity index 100% rename from endtoend-testing/src/test/resources/languageTestFiles/java/sortAlgo/SortAlgo1.java rename to endtoend-testing/src/test/resources/data/sortAlgo/SortAlgo1.java diff --git a/endtoend-testing/src/test/resources/languageTestFiles/java/sortAlgo/SortAlgo1_2.java b/endtoend-testing/src/test/resources/data/sortAlgo/SortAlgo1_2.java similarity index 100% rename from endtoend-testing/src/test/resources/languageTestFiles/java/sortAlgo/SortAlgo1_2.java rename to endtoend-testing/src/test/resources/data/sortAlgo/SortAlgo1_2.java diff --git a/endtoend-testing/src/test/resources/languageTestFiles/java/sortAlgo/SortAlgo1_3.java b/endtoend-testing/src/test/resources/data/sortAlgo/SortAlgo1_3.java similarity index 100% rename from endtoend-testing/src/test/resources/languageTestFiles/java/sortAlgo/SortAlgo1_3.java rename to endtoend-testing/src/test/resources/data/sortAlgo/SortAlgo1_3.java diff --git a/endtoend-testing/src/test/resources/languageTestFiles/java/sortAlgo/SortAlgo1_4.java b/endtoend-testing/src/test/resources/data/sortAlgo/SortAlgo1_4.java similarity index 100% rename from endtoend-testing/src/test/resources/languageTestFiles/java/sortAlgo/SortAlgo1_4.java rename to endtoend-testing/src/test/resources/data/sortAlgo/SortAlgo1_4.java diff --git a/endtoend-testing/src/test/resources/languageTestFiles/java/sortAlgo/SortAlgo1_5.java b/endtoend-testing/src/test/resources/data/sortAlgo/SortAlgo1_5.java similarity index 100% rename from endtoend-testing/src/test/resources/languageTestFiles/java/sortAlgo/SortAlgo1_5.java rename to endtoend-testing/src/test/resources/data/sortAlgo/SortAlgo1_5.java diff --git a/endtoend-testing/src/test/resources/languageTestFiles/java/sortAlgo/SortAlgo1_6.java b/endtoend-testing/src/test/resources/data/sortAlgo/SortAlgo1_6.java similarity index 100% rename from endtoend-testing/src/test/resources/languageTestFiles/java/sortAlgo/SortAlgo1_6.java rename to endtoend-testing/src/test/resources/data/sortAlgo/SortAlgo1_6.java diff --git a/endtoend-testing/src/test/resources/languageTestFiles/java/sortAlgo/SortAlgo2.java b/endtoend-testing/src/test/resources/data/sortAlgo/SortAlgo2.java similarity index 100% rename from endtoend-testing/src/test/resources/languageTestFiles/java/sortAlgo/SortAlgo2.java rename to endtoend-testing/src/test/resources/data/sortAlgo/SortAlgo2.java diff --git a/endtoend-testing/src/test/resources/languageTestFiles/java/sortAlgo/SortAlgo2_5.java b/endtoend-testing/src/test/resources/data/sortAlgo/SortAlgo2_5.java similarity index 100% rename from endtoend-testing/src/test/resources/languageTestFiles/java/sortAlgo/SortAlgo2_5.java rename to endtoend-testing/src/test/resources/data/sortAlgo/SortAlgo2_5.java diff --git a/endtoend-testing/src/test/resources/languageTestFiles/java/sortAlgo/SortAlgo3.java b/endtoend-testing/src/test/resources/data/sortAlgo/SortAlgo3.java similarity index 100% rename from endtoend-testing/src/test/resources/languageTestFiles/java/sortAlgo/SortAlgo3.java rename to endtoend-testing/src/test/resources/data/sortAlgo/SortAlgo3.java diff --git a/endtoend-testing/src/test/resources/languageTestFiles/java/sortAlgo/SortAlgo3_5.java b/endtoend-testing/src/test/resources/data/sortAlgo/SortAlgo3_5.java similarity index 100% rename from endtoend-testing/src/test/resources/languageTestFiles/java/sortAlgo/SortAlgo3_5.java rename to endtoend-testing/src/test/resources/data/sortAlgo/SortAlgo3_5.java diff --git a/endtoend-testing/src/test/resources/languageTestFiles/java/sortAlgo/SortAlgo3_6.java b/endtoend-testing/src/test/resources/data/sortAlgo/SortAlgo3_6.java similarity index 100% rename from endtoend-testing/src/test/resources/languageTestFiles/java/sortAlgo/SortAlgo3_6.java rename to endtoend-testing/src/test/resources/data/sortAlgo/SortAlgo3_6.java diff --git a/endtoend-testing/src/test/resources/languageTestFiles/java/sortAlgo/SortAlgo4.java b/endtoend-testing/src/test/resources/data/sortAlgo/SortAlgo4.java similarity index 100% rename from endtoend-testing/src/test/resources/languageTestFiles/java/sortAlgo/SortAlgo4.java rename to endtoend-testing/src/test/resources/data/sortAlgo/SortAlgo4.java diff --git a/endtoend-testing/src/test/resources/languageTestFiles/java/sortAlgo/SortAlgo4d1.java b/endtoend-testing/src/test/resources/data/sortAlgo/SortAlgo4d1.java similarity index 100% rename from endtoend-testing/src/test/resources/languageTestFiles/java/sortAlgo/SortAlgo4d1.java rename to endtoend-testing/src/test/resources/data/sortAlgo/SortAlgo4d1.java diff --git a/endtoend-testing/src/test/resources/languageTestFiles/java/sortAlgo/SortAlgo4d2.java b/endtoend-testing/src/test/resources/data/sortAlgo/SortAlgo4d2.java similarity index 100% rename from endtoend-testing/src/test/resources/languageTestFiles/java/sortAlgo/SortAlgo4d2.java rename to endtoend-testing/src/test/resources/data/sortAlgo/SortAlgo4d2.java diff --git a/endtoend-testing/src/test/resources/languageTestFiles/java/sortAlgo/SortAlgo4d3.java b/endtoend-testing/src/test/resources/data/sortAlgo/SortAlgo4d3.java similarity index 100% rename from endtoend-testing/src/test/resources/languageTestFiles/java/sortAlgo/SortAlgo4d3.java rename to endtoend-testing/src/test/resources/data/sortAlgo/SortAlgo4d3.java diff --git a/endtoend-testing/src/test/resources/languageTestFiles/java/sortAlgo/SortAlgo5.java b/endtoend-testing/src/test/resources/data/sortAlgo/SortAlgo5.java similarity index 100% rename from endtoend-testing/src/test/resources/languageTestFiles/java/sortAlgo/SortAlgo5.java rename to endtoend-testing/src/test/resources/data/sortAlgo/SortAlgo5.java diff --git a/endtoend-testing/src/test/resources/languageTestFiles/java/sortAlgo/SortAlgo6.java b/endtoend-testing/src/test/resources/data/sortAlgo/SortAlgo6.java similarity index 100% rename from endtoend-testing/src/test/resources/languageTestFiles/java/sortAlgo/SortAlgo6.java rename to endtoend-testing/src/test/resources/data/sortAlgo/SortAlgo6.java diff --git a/endtoend-testing/src/test/resources/languageTestFiles/java/sortAlgo/SortAlgo7.java b/endtoend-testing/src/test/resources/data/sortAlgo/SortAlgo7.java similarity index 100% rename from endtoend-testing/src/test/resources/languageTestFiles/java/sortAlgo/SortAlgo7.java rename to endtoend-testing/src/test/resources/data/sortAlgo/SortAlgo7.java diff --git a/endtoend-testing/src/test/resources/dataSetTemplate.json b/endtoend-testing/src/test/resources/dataSetTemplate.json new file mode 100644 index 000000000..fe10e8d15 --- /dev/null +++ b/endtoend-testing/src/test/resources/dataSetTemplate.json @@ -0,0 +1,13 @@ +{ + "name": "The name of the data set.", + "language": "The language identifier for the data set.", + "format": "The format of the data set. Must be defined in de.jplag.endtoend.model.DataSetFormat.", + "sourceDirectory": "The root directory of the data set. The contents need to match the format.", + "resultFile": "(optional) The path to the result file. If not set defaults to: results/$name.json.", + "goldStandardFile": "(optional) Set to activate the gold standard test.", + "options": { + "_comment": "(optional) Provide to specify options for jplag", + "minimumTokenMatches": [" (optional) add additional minimum token matches to check for the data set. 3 and 9 are always checked."], + "baseCodeDirectory": "(optional) here you can provide the name of the base code directory. The exact path will be resolved using the format" + } +} \ No newline at end of file diff --git a/endtoend-testing/src/test/resources/dataSets/progpedia.json b/endtoend-testing/src/test/resources/dataSets/progpedia.json new file mode 100644 index 000000000..531e6777d --- /dev/null +++ b/endtoend-testing/src/test/resources/dataSets/progpedia.json @@ -0,0 +1,10 @@ +{ + "name": "progpedia", + "language": "java", + "format": "PROGPEDIA", + "storageFormat": "ZIP", + "goldStandardFile": "plagiate.csv", + "options": { + "baseCodeDirectory": "base" + } +} \ No newline at end of file diff --git a/endtoend-testing/src/test/resources/dataSets/sortAlgo.json b/endtoend-testing/src/test/resources/dataSets/sortAlgo.json new file mode 100644 index 000000000..6875d569e --- /dev/null +++ b/endtoend-testing/src/test/resources/dataSets/sortAlgo.json @@ -0,0 +1,5 @@ +{ + "name": "sortAlgo", + "language": "java", + "format": "PLAIN" +} \ No newline at end of file diff --git a/endtoend-testing/src/test/resources/results/progpedia.json b/endtoend-testing/src/test/resources/results/progpedia.json new file mode 100644 index 000000000..ec8aad38b --- /dev/null +++ b/endtoend-testing/src/test/resources/results/progpedia.json @@ -0,0 +1,21467 @@ +[ { + "tests" : { + "00113_00002-00141_00002" : { + "minimal_similarity" : 0.5819672131147541, + "maximum_similarity" : 0.6574074074074074, + "matched_token_number" : 71 + }, + "00092_00001-00197_00001" : { + "minimal_similarity" : 0.48484848484848486, + "maximum_similarity" : 0.5423728813559322, + "matched_token_number" : 64 + }, + "00140_00001-00154_00002" : { + "minimal_similarity" : 0.5630252100840336, + "maximum_similarity" : 0.7701149425287356, + "matched_token_number" : 67 + }, + "00013_00002-00129_00008" : { + "minimal_similarity" : 0.32340425531914896, + "maximum_similarity" : 0.8, + "matched_token_number" : 76 + }, + "00005_00002-00125_00001" : { + "minimal_similarity" : 0.525, + "maximum_similarity" : 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0.21568627450980393, + "matched_token_number" : 33 + }, + "00044_00002-00119_00001" : { + "minimal_similarity" : 0.18, + "maximum_similarity" : 0.19852941176470587, + "matched_token_number" : 27 + } + }, + "identifier" : "MTM: 9", + "goldStandard" : { + "matchAverage" : 0.9691523648180836, + "nonMatchAverage" : 0.1309958405783095 + } +} ] \ No newline at end of file diff --git a/endtoend-testing/src/test/resources/results/java/sortAlgo.json b/endtoend-testing/src/test/resources/results/sortAlgo.json similarity index 99% rename from endtoend-testing/src/test/resources/results/java/sortAlgo.json rename to endtoend-testing/src/test/resources/results/sortAlgo.json index 70c8ebbbc..392147633 100644 --- a/endtoend-testing/src/test/resources/results/java/sortAlgo.json +++ b/endtoend-testing/src/test/resources/results/sortAlgo.json @@ -1,7 +1,4 @@ [ { - "options" : { - "minimum_token_match" : 3 - }, "tests" : { "SortAlgo-SortAlgo5" : { "minimal_similarity" : 0.6511627906976745, @@ -448,12 +445,12 @@ "maximum_similarity" : 0.8604651162790697, "matched_token_number" : 37 }, - "SortAlgo3_6-SortAlgo5" : { + "SortAlgo2_5-SortAlgo3_6" : { "minimal_similarity" : 0.5, "maximum_similarity" : 0.6511627906976745, "matched_token_number" : 28 }, - "SortAlgo2_5-SortAlgo3_6" : { + "SortAlgo3_6-SortAlgo5" : { "minimal_similarity" : 0.5, "maximum_similarity" : 0.6511627906976745, "matched_token_number" : 28 @@ -563,12 +560,12 @@ "maximum_similarity" : 0.627906976744186, "matched_token_number" : 27 }, - "SortAlgo2_5-SortAlgo7" : { + "SortAlgo1_5-SortAlgo7" : { "minimal_similarity" : 0.375, "maximum_similarity" : 0.4883720930232558, "matched_token_number" : 21 }, - "SortAlgo1_5-SortAlgo7" : { + "SortAlgo2_5-SortAlgo7" : { "minimal_similarity" : 0.375, "maximum_similarity" : 0.4883720930232558, "matched_token_number" : 21 @@ -858,11 +855,10 @@ "maximum_similarity" : 0.9069767441860465, "matched_token_number" : 39 } - } -}, { - "options" : { - "minimum_token_match" : 9 }, + "identifier" : "MTM: 3", + "goldStandard" : null +}, { "tests" : { "SortAlgo-SortAlgo5" : { "minimal_similarity" : 0.27906976744186046, @@ -1309,12 +1305,12 @@ "maximum_similarity" : 0.6976744186046512, "matched_token_number" : 30 }, - "SortAlgo3_6-SortAlgo5" : { + "SortAlgo2_5-SortAlgo3_6" : { "minimal_similarity" : 0.0, "maximum_similarity" : 0.0, "matched_token_number" : 0 }, - "SortAlgo2_5-SortAlgo3_6" : { + "SortAlgo3_6-SortAlgo5" : { "minimal_similarity" : 0.0, "maximum_similarity" : 0.0, "matched_token_number" : 0 @@ -1424,12 +1420,12 @@ "maximum_similarity" : 0.0, "matched_token_number" : 0 }, - "SortAlgo2_5-SortAlgo7" : { + "SortAlgo1_5-SortAlgo7" : { "minimal_similarity" : 0.19642857142857142, "maximum_similarity" : 0.2558139534883721, "matched_token_number" : 11 }, - "SortAlgo1_5-SortAlgo7" : { + "SortAlgo2_5-SortAlgo7" : { "minimal_similarity" : 0.19642857142857142, "maximum_similarity" : 0.2558139534883721, "matched_token_number" : 11 @@ -1469,12 +1465,12 @@ "maximum_similarity" : 0.20408163265306123, "matched_token_number" : 10 }, - "SortAlgo3_5-SortAlgo7" : { + "SortAlgo1_5-SortAlgo3" : { "minimal_similarity" : 0.0, "maximum_similarity" : 0.0, "matched_token_number" : 0 }, - "SortAlgo1_5-SortAlgo3" : { + "SortAlgo3_5-SortAlgo7" : { "minimal_similarity" : 0.0, "maximum_similarity" : 0.0, "matched_token_number" : 0 @@ -1584,12 +1580,12 @@ "maximum_similarity" : 0.2558139534883721, "matched_token_number" : 11 }, - "SortAlgo3_5-SortAlgo4d1" : { + "SortAlgo2_5-SortAlgo3" : { "minimal_similarity" : 0.0, "maximum_similarity" : 0.0, "matched_token_number" : 0 }, - "SortAlgo2_5-SortAlgo3" : { + "SortAlgo3_5-SortAlgo4d1" : { "minimal_similarity" : 0.0, "maximum_similarity" : 0.0, "matched_token_number" : 0 @@ -1719,5 +1715,7 @@ "maximum_similarity" : 0.5348837209302325, "matched_token_number" : 23 } - } + }, + "identifier" : "MTM: 9", + "goldStandard" : null } ] \ No newline at end of file