config_mokp.json

{
  "nodes_file": "https://db.systemsbiology.net/gestalt/KG/Multiomics_KG_nodes_v0.2.2.tsv",
  "edges_file": "https://db.systemsbiology.net/gestalt/KG/Multiomics_KG_edges_p0.2.2.tsv.gz",
  "biolink_version": "4.2.1",
  "kp_infores_curie": "infores:multiomics-multiomics",
  "endpoint_name": "mokp",
  "labels": {
    "edges": "predicate",
    "nodes": "category"
  },
  "remote_subclass_edges_file_url": "https://kg2webhost.rtx.ai/kg2.10.0pre_subclass_edges_manual_agent.jsonl.gz",
  "subclass_sources": ["infores:mondo", "infores:chebi", "infores:hpo", "infores:ncit"],
  "num_edges_per_answer_cutoff": 100000,
  "normalize": false,
  "convert_input_ids": true,
  "drug_chemical_conflation": false,
  "biolink_helper_branch": "master",
  "ignore_edge_properties": ["p_correction_method", "author_year", "table_url", "sheet_name", "yaml_curator_and_organization"],
  "other_array_properties": ["source_record_urls"],
  "trapi_attribute_map": {
    "knowledge_level": {
      "attribute_type_id": "biolink:knowledge_level",
      "attribute_source": "{kp_infores_curie}"
    },
    "agent_type": {
      "attribute_type_id": "biolink:agent_type",
      "attribute_source": "{kp_infores_curie}"
    },
    "relationship_strength": {
      "attribute_type_id": "STATO:0000085", # Effect size estimate, http://purl.obolibrary.org/obo/STATO_0000085
      "attribute_source": "{kp_infores_curie}",
      "value_type_id": "metatype:Float"
    },
    "n": {
      "attribute_type_id": "GECKO:0000106", # Sample size, http://purl.obolibrary.org/obo/GECKO_0000106
      "attribute_source": "{kp_infores_curie}",
      "value_type_id": "metatype:Integer"
    },
    "p": {
      "attribute_type_id": "biolink:adjusted_p_value",
      "value_type_id": "metatype:Float"
    },
    "relationship_type": {           # the analytical method used to compute, could be "linear_regression", "spearman_correlation", "two_sided_wald_test", several others
      "attribute_type_id": "AFR_0000895",   # analytical method, http://purl.allotrope.org/ontologies/result#AFR_0000895
      "value_type_id": "metatype:String"
    },
    "publication": {
      "attribute_type_id": "biolink:publications",
      "value_type_id": "biolink:Uriorcurie"
    },
  },
  "sources_template": {
    "default": [
      {
        "resource_id":  "{kp_infores_curie}",
        "resource_role":  "primary_knowledge_source"
      },
      {
        "resource_id":  "infores:pubmed-central",
        "resource_role":  "supporting_data_source"
      }
    ]
  }
}