St. Jude Rust Labs

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11 repositories

wdl
Public
Rust crates for working with Workflow Description Language (WDL) documents.
workflow bioinformatics workflow-engine ngs next-generation-sequencing wdl wdl-workflow
Rust
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Apache License 2.0
•9•32•23•4•Updated Jan 14, 2025Jan 14, 2025
sprocket-vscode
Public
Visual Studio Code extension for Sprocket (https://github.com/stjude-rust-labs/sprocket).
workflow bioinformatics workflow-engine vscode vscode-extension wdl wdl-workflow wdl-devtools
TypeScript
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Apache License 2.0
•1•3•1•0•Updated Jan 12, 2025Jan 12, 2025
sprocket
Public
A bioinformatics workflow engine built on top of the Workflow Description Language (WDL).
workflow bioinformatics workflow-engine bioinformatics-pipeline wdl wdl-workflow wdl-devtools
Rust
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Apache License 2.0
•3•38•6•2•Updated Jan 10, 2025Jan 10, 2025
chainfile
Public
A crate for working with genomics chain files.
rust bioinformatics genomics liftover
Rust
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Apache License 2.0
•1•10•0•0•Updated Jan 4, 2025Jan 4, 2025
omics
Public
Foundations for the Rust omics ecosystem.
Rust
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Apache License 2.0
•0•9•1•0•Updated Jan 3, 2025Jan 3, 2025
crankshaft
Public
A Rust-based, headless workflow execution engine supporting local, cloud, and HPC.
workflow bioinformatics workflow-engine
Rust
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Apache License 2.0
•4•24•1•1•Updated Dec 4, 2024Dec 4, 2024
.github
Public
0•0•0•0•Updated Dec 4, 2024Dec 4, 2024
fq
Public
Command line utility for manipulating Illumina-generated FASTQ files.
rust bioinformatics genomics next-generation-sequencing illumina fastq fastq-files
Rust
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MIT License
•5•78•5•0•Updated Nov 20, 2024Nov 20, 2024
ngs
Public
Command line utility for working with next-generation sequencing files.
rust bioinformatics genomics ngs next-generation-sequencing
Rust
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Apache License 2.0
•2•33•2•2•Updated Nov 12, 2024Nov 12, 2024
tes
Public
A crate for working with the Task Execution Service (TES) specification.
workflow bioinformatics workflow-engine ga4gh tes ga4gh-tes
Rust
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Apache License 2.0
•0•4•0•0•Updated Nov 12, 2024Nov 12, 2024
sprocket-action
Public
Run Sprocket WDL document validation as part of a CI/CD pipeline with GitHub Actions.
workflow bioinformatics workflow-engine bioinformatics-pipeline wdl wdl-workflow wdl-devtools
Shell
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Apache License 2.0
•1•6•0•0•Updated Nov 12, 2024Nov 12, 2024