diff --git a/doc/Makefile b/doc/Makefile new file mode 100644 index 0000000..a0f4066 --- /dev/null +++ b/doc/Makefile @@ -0,0 +1,23 @@ +# Minimal makefile for Sphinx documentation +# + +# You can set these variables from the command line, and also +# from the environment for the first two. +SPHINXOPTS ?= +SPHINXBUILD ?= sphinx-build +SOURCEDIR = source +BUILDDIR = build + +# Put it first so that "make" without argument is like "make help". +help: + @$(SPHINXBUILD) -M help "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O) + +.PHONY: help Makefile + +# Catch-all target: route all unknown targets to Sphinx using the new +# "make mode" option. $(O) is meant as a shortcut for $(SPHINXOPTS). +%: Makefile + @$(SPHINXBUILD) -M $@ "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O) + +view: html + $(BROWSER) build/html/index.html diff --git a/doc/source/_static/css/style.css b/doc/source/_static/css/style.css new file mode 100644 index 0000000..46c934c --- /dev/null +++ b/doc/source/_static/css/style.css @@ -0,0 +1,7 @@ +.wy-side-nav-search { + background-color: #6400FF; +} + +.wy-nav-top { + background-color: #6400FF; +} diff --git a/doc/source/_static/qibo_logo_dark.svg b/doc/source/_static/qibo_logo_dark.svg new file mode 100644 index 0000000..3b7dc40 --- /dev/null +++ b/doc/source/_static/qibo_logo_dark.svg @@ -0,0 +1,121 @@ + + + + + + + + + + + + image/svg+xml + + + + + + + + + + + + + + + + + + + + diff --git a/doc/source/_static/qibo_logo_light.svg b/doc/source/_static/qibo_logo_light.svg new file mode 100644 index 0000000..bb907e7 --- /dev/null +++ b/doc/source/_static/qibo_logo_light.svg @@ -0,0 +1,80 @@ + + + + + + + + + + + + image/svg+xml + + + + + + + + + + diff --git a/doc/source/api-reference/qiboml.backends.rst b/doc/source/api-reference/qiboml.backends.rst new file mode 100644 index 0000000..67adf3e --- /dev/null +++ b/doc/source/api-reference/qiboml.backends.rst @@ -0,0 +1,34 @@ +qiboml.backends package +======================= + +.. automodule:: qiboml.backends + :members: + :undoc-members: + :show-inheritance: + +Submodules +---------- + +qiboml.backends.jax module +-------------------------- + +.. automodule:: qiboml.backends.jax + :members: + :undoc-members: + :show-inheritance: + +qiboml.backends.pytorch module +------------------------------ + +.. automodule:: qiboml.backends.pytorch + :members: + :undoc-members: + :show-inheritance: + +qiboml.backends.tensorflow module +--------------------------------- + +.. automodule:: qiboml.backends.tensorflow + :members: + :undoc-members: + :show-inheritance: diff --git a/doc/source/api-reference/qiboml.rst b/doc/source/api-reference/qiboml.rst new file mode 100644 index 0000000..32766fd --- /dev/null +++ b/doc/source/api-reference/qiboml.rst @@ -0,0 +1,15 @@ +qiboml package +============== + +.. automodule:: qiboml + :members: + :undoc-members: + :show-inheritance: + +Subpackages +----------- + +.. toctree:: + :maxdepth: 4 + + qiboml.backends diff --git a/doc/source/conf.py b/doc/source/conf.py new file mode 100644 index 0000000..dde5944 --- /dev/null +++ b/doc/source/conf.py @@ -0,0 +1,150 @@ +# Configuration file for the Sphinx documentation builder. +# +# This file only contains a selection of the most common options. For a full +# list see the documentation: +# https://www.sphinx-doc.org/en/master/usage/configuration.html + +# -- Path setup -------------------------------------------------------------- + +# If extensions (or modules to document with autodoc) are in another directory, +# add these directories to sys.path here. If the directory is relative to the +# documentation root, use os.path.abspath to make it absolute, like shown here. +# +import os +from pathlib import Path + +from recommonmark.transform import AutoStructify +from sphinx.ext import apidoc + +import qiboml + +# -- Project information ----------------------------------------------------- + +project = "qiboml" +copyright = "2024, The Qibo team" +author = "The Qibo team" + +release = qiboml.__version__ + + +# -- General configuration --------------------------------------------------- + +# https://stackoverflow.com/questions/56336234/build-fail-sphinx-error-contents-rst-not-found +# master_doc = "index" + +autodoc_mock_imports = ["qm"] +autodoc_default_options = { + "members": True, + "undoc-members": True, + "private-members": True, + "inherited-members": True, + "exclude-members": "load, execution_parameters, classify", +} + +# Add any Sphinx extension module names here, as strings. They can be +# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom +# ones. +extensions = [ + "sphinx.ext.autodoc", + "sphinx.ext.doctest", + "sphinx.ext.coverage", + "sphinx.ext.napoleon", + "sphinx.ext.intersphinx", + "recommonmark", + "sphinx.ext.viewcode", + "sphinx.ext.todo", + "sphinx_copybutton", + "sphinxcontrib.bibtex", +] + +bibtex_bibfiles = ["refs.bib"] + +# Add any paths that contain templates here, relative to this directory. +templates_path = ["_templates"] + +# List of patterns, relative to source directory, that match files and +# directories to ignore when looking for source files. +# This pattern also affects html_static_path and html_extra_path. +exclude_patterns = [] + + +# -- Options for HTML output ------------------------------------------------- + +# The theme to use for HTML and HTML Help pages. See the documentation for +# a list of builtin themes. + +html_theme = "furo" +html_favicon = "favicon.ico" + +# custom title +html_title = "Qiboml · v" + release + +html_theme_options = { + "top_of_page_button": "edit", + "source_repository": "https://github.com/qiboteam/qiboml/", + "source_branch": "main", + "source_directory": "doc/source/", + "light_logo": "qibo_logo_dark.svg", + "dark_logo": "qibo_logo_light.svg", + "light_css_variables": { + "color-brand-primary": "#6400FF", + "color-brand-secondary": "#6400FF", + "color-brand-content": "#6400FF", + }, + "footer_icons": [ + { + "name": "GitHub", + "url": "https://github.com/qiboteam/qiboml", + "html": """ + + + + """, + "class": "", + }, + ], +} + +# Add any paths that contain custom static files (such as style sheets) here, +# relative to this directory. They are copied after the builtin static files, +# so a file named "default.css" will overwrite the builtin "default.css". +html_static_path = ["_static"] + + +# -- Intersphinx ------------------------------------------------------------- + +intersphinx_mapping = {"python": ("https://docs.python.org/3", None)} + + +# -- Doctest ------------------------------------------------------------------ +# + +doctest_path = [os.path.abspath("../examples")] + +# -- Autodoc ------------------------------------------------------------------ +# +autodoc_member_order = "bysource" + + +# Adapted this from +# https://github.com/readthedocs/recommonmark/blob/ddd56e7717e9745f11300059e4268e204138a6b1/docs/conf.py +# app setup hook + + +def run_apidoc(_): + """Extract autodoc directives from package structure.""" + source = Path(__file__).parent + docs_dest = source / "api-reference" + package = source.parents[1] / "src" / "qiboml" + apidoc.main(["--no-toc", "--module-first", "-o", str(docs_dest), str(package)]) + + +def setup(app): + app.add_config_value("recommonmark_config", {"enable_eval_rst": True}, True) + app.add_transform(AutoStructify) + app.add_css_file("css/style.css") + + app.connect("builder-inited", run_apidoc) + + +html_show_sourcelink = False diff --git a/doc/source/favicon.ico b/doc/source/favicon.ico new file mode 100644 index 0000000..62c493a Binary files /dev/null and b/doc/source/favicon.ico differ diff --git a/doc/source/getting-started/construct_backends.rst b/doc/source/getting-started/construct_backends.rst new file mode 100644 index 0000000..ee5c1d9 --- /dev/null +++ b/doc/source/getting-started/construct_backends.rst @@ -0,0 +1,41 @@ +Setup a quantum machine learning backend +======================================== + +Among other features, Qiboml is a backend provider for Qibo. In particular, it can +be used to construct differentiable backends to execute quantum machine learning +algorithms. Currently, we support Tensorflow automatic differentiation, while +Pytorch and Jax backends will be implemented in the next future. + +To run a quantum algorithm in Qibo activating the tracing of gradients it is important +to set one of the backends provided by Qiboml. + +.. code-block:: + + import qibo + from qibo import Circuit, gates, hamiltonians + + # set the backend using qiboml as provider + qibo.set_backend(backend="qiboml", platform="tensorflow") + tf = qibo.get_backend().tf + + # define some variables + thetas = tf.Variable([0.4, 0.7]) + + # construct a quantum circuit with Qibo + c = Circuit(1) + c.add(gates.H(q=0)) + c.add(gates.RZ(q=0, theta=0.)) + c.add(gates.RY(q=0, theta=0.)) + + # construct an hamiltonian with Qibo + h = hamiltonians.Z(nqubits=1) + + # automatic differentiation with tensorflow + with tf.GradientTape() as tape: + # set the variables w.r.t. we want the gradient into the circuit + c.set_parameters(thetas) + # compute an expectation value + expval = h.expectation(c().state()) + + # collect gradient + grad = tape.gradient(expval, thetas) diff --git a/doc/source/getting-started/index.rst b/doc/source/getting-started/index.rst new file mode 100644 index 0000000..aae5b7a --- /dev/null +++ b/doc/source/getting-started/index.rst @@ -0,0 +1,11 @@ +Getting started +=============== + +In this section we present the basic aspects of the Qiboml design and provide installation instructions. +Please visit the following sections to understand how ``qiboml`` works. + +.. toctree:: + :maxdepth: 1 + + installation + construct_backends diff --git a/doc/source/getting-started/installation.rst b/doc/source/getting-started/installation.rst new file mode 100644 index 0000000..377e2c0 --- /dev/null +++ b/doc/source/getting-started/installation.rst @@ -0,0 +1,10 @@ +Installation instructions +========================= + +Qiboml can be installed directly from the source repository on Github: + +.. code-block:: + + git clone https://github.com/qiboteam/qiboml.git + cd qiboml + poetry install diff --git a/doc/source/index.rst b/doc/source/index.rst new file mode 100644 index 0000000..c8f1e52 --- /dev/null +++ b/doc/source/index.rst @@ -0,0 +1,64 @@ +.. title:: + Qiboml + + +What is Qiboml? +=============== + + +Qiboml is an open-source and full-stack quantum machine learning package based on Qibo. +Among the goals of Qiboml we have: + +* provide automatic differentiable backends for any Qibo application; +* render Qibo circuits as differentiable layers of well-known machine learning frameworks such as Tensorflow and Pytorch; +* extend quantum machine learning algorithm execution to self-hosted devices through Qibolab; +* integrate hardware-level routines into higher-level quantum machine learning algorithms through Qibocal. + + +How to Use the Documentation +============================ + +Welcome to the comprehensive documentation for Qiboml! +This guide will help you navigate through the various sections and make the most of the resources available. + + +1. **Getting started**: Begin by referring to the + :doc:`/getting-started/installation/` guide to set up the ``Qiboml`` library in your environment. +2. Learn how to setup a differentiable Qibo backend for quantum machine learning applications with + :doc:`/getting-started/construct_backends/` guide. + +Contents +-------- + +.. toctree:: + :maxdepth: 2 + :caption: Introduction + + getting-started/index + +.. toctree:: + :maxdepth: 1 + :caption: Main documentation + + api-reference/qiboml + Developer guides + +.. toctree:: + :maxdepth: 1 + :caption: Documentation links + + Qibo docs + Qibolab docs + Qibocal docs + Qibosoq docs + Qibochem docs + Qiboml docs + Qibotn docs + Qibo-cloud-backends docs + +Indices and tables +================== + +* :ref:`genindex` +* :ref:`modindex` +* :ref:`search` diff --git a/doc/source/refs.bib b/doc/source/refs.bib new file mode 100644 index 0000000..403900a --- /dev/null +++ b/doc/source/refs.bib @@ -0,0 +1,12 @@ +@article{Efthymiou_2021, + title={Qibo: a framework for quantum simulation with hardware acceleration}, + volume={7}, + ISSN={2058-9565}, + url={http://dx.doi.org/10.1088/2058-9565/ac39f5}, + DOI={10.1088/2058-9565/ac39f5}, + number={1}, + journal={Quantum Science and Technology}, + publisher={IOP Publishing}, + author={Efthymiou, Stavros and Ramos-Calderer, Sergi and Bravo-Prieto, Carlos and Pérez-Salinas, Adrián and García-Martín, Diego and Garcia-Saez, Artur and Latorre, José Ignacio and Carrazza, Stefano}, + year={2021}, + month=dec, pages={015018} } diff --git a/poetry.lock b/poetry.lock index b927399..2be3a48 100644 --- a/poetry.lock +++ b/poetry.lock @@ -11,6 +11,17 @@ files = [ {file = "absl_py-2.1.0-py3-none-any.whl", hash = "sha256:526a04eadab8b4ee719ce68f204172ead1027549089702d99b9059f129ff1308"}, ] +[[package]] +name = "alabaster" +version = "0.7.16" +description = "A light, configurable Sphinx theme" +optional = false +python-versions = ">=3.9" +files = [ + {file = "alabaster-0.7.16-py3-none-any.whl", hash = "sha256:b46733c07dce03ae4e150330b975c75737fa60f0a7c591b6c8bf4928a28e2c92"}, + {file = "alabaster-0.7.16.tar.gz", hash = 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version = "0.0.1" description = "Quantum Machine Learning using Qibo" authors = ["Qiboteam"] readme = "README.md" +homepage = "https://qibo.science/" +repository = "https://github.com/qiboteam/qiboml/" +documentation = "https://qibo.science/docs/qiboml/stable" packages = [{ include = "qiboml", from = "src" }] [tool.poetry.dependencies] @@ -21,6 +24,16 @@ jaxlib = "^0.4.25" # TODO: this is temporary and has to be updated with Qibo qibo = { git = "https://github.com/qiboteam/qibo.git" } +[tool.poetry.group.docs] +optional = true + +[tool.poetry.group.docs.dependencies] +Sphinx = "^5.3.0" +furo = "^2023.3.27" +sphinxcontrib-bibtex = "^2.5.0" +sphinx-copybutton = "^0.5.2" +sphinxcontrib-katex = "^0.9.9" + [tool.poetry.group.dev] optional = true @@ -40,6 +53,9 @@ bench = "pytest benchmarks/" test = "pytest" lint = "pylint src/**/*.py -E" lint-warnings = "pylint src/**/*.py --exit-zero" +docs = "make -C doc html" +docs-clean = "make -C doc clean" +test-docs = "make -C doc doctest" 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