Settings.paf

Project ID: PAF Salford
Root type: Subject
Default fields: [Creation date, Creation time]

Date format: Iso
Date separator: Dash

Filename filter: \.(pdf|docx|cmz|cmo|r3w|jpg|jpeg|html)$

Package Information:
  Name: qualisys_CGM2_workflow
  Version: 1.0.0
  Required QTM version: 2.17.3700

Types:
  Subject:
    Patient:
      Fields: [Patient ID, First name, Last name, Date of birth, Height, Weight, Sex]
      Children: [Session]
      Directory pattern: $Last name$_$First name$_$Date of birth$_$Patient ID$
      Icon: Assets\Icons\paf_patient.ico

  Session:
    Fields: [Case ID, Diagnosis, Affected side, Gross Motor Function Classification, Functional Mobility Scale, Session date, Normative data, Leg length left, Leg length right, Knee width left, Knee width right, Ankle width left, Ankle width right, Sole delta left, Sole delta right, Shoulder offset left, Elbow width left, Wrist width left, Hand thickness left, Shoulder offset right, Elbow width right, Wrist width right, Hand thickness right, Marker diameter, Moment Projection]
    Gait Session:
      Directory pattern: $Session date$
      Display order: [Patient ID, Case ID, First name, Last name, Date of birth, Weight, Height, Test condition, Comments, Session date, Creation date, Creation time, Diagnosis, Affected side, Gross Motor Function Classification, Functional Mobility Scale, Leg length left, Leg length right, Knee width left, Knee width right, Ankle width left, Ankle width right, Sole delta left, Sole delta right, Shoulder offset left, Elbow width left, Wrist width left, Hand thickness left, Shoulder offset right, Elbow width right, Wrist width right, Hand thickness right, Marker diameter, Moment Projection]
      Fields: [Session date]
      Children: [Subsession]

  Subsession:
    CGM2 - Full body session:
      Fields: [Test condition, Test operator, Prothesis_Orthosis, Personal aid, Create PDF report, CGM2 Model, Check Events In Mokka, Anomaly Exception]
      Measurements: [Static - CGM2, Left Knee Calibration - CGM2, Right Knee Calibration - CGM2, Gait - CGM2]
      Analyses: [Generate Session, CGM10 Processing, CGM11 Processing, CGM21 Processing, CGM22 Processing, CGM23 Processing, CGM24 Processing, CGM25 Processing, CGM26 Processing]
      Directory pattern: $Creation date$_Barefoot
      Display order: [CGM2 Model]
      Shoes: Barefoot
      External aid: No help
      PDF guide: ..\Documentation\CGM2_Marker_Set_Full_Body.pdf

Measurements:
  Fields:
    Measurement length: 15
    Maximum count: 1
  Static - CGM2:
    Heading: Static
    Measurement length: 10
    Minimum count: 1
    Maximum count: 1
    AIM models: CGM2_Static_Full_Body.qam
    Measurement type: Static
    Task: Static
    Fields: [Left foot normalised to static trial, Right foot normalised to static trial, Head normalised to static trial]

  Left Knee Calibration - CGM2:
    Heading: Left Knee Calibration
    Count: 1
    Measurement type: Dynamic
    AIM models: CGM2_Dynamic_Full_Body.qam
    Task: Functional knee calibration
    Fields: [ Knee functional calibration method, Marker lowpass filter frequency, Marker lowpass filter order]

  Right Knee Calibration - CGM2:
    Heading: Right Knee Calibration
    Count: 1
    Measurement type: Dynamic
    AIM models: CGM2_Dynamic_Full_Body.qam
    Task: Functional knee calibration
    Fields: [ Knee functional calibration method, Marker lowpass filter frequency, Marker lowpass filter order]

  Gait - CGM2:
    Heading: Gait
    Count: 6
    Maximum count: 30
    Measurement type: Dynamic
    AIM models: CGM2_Dynamic_Full_Body.qam
    Task: Normal gait
    Fields: [Event mode, Forceplate1, Forceplate2, Forceplate3, Forceplate4, Forceplate5, Marker lowpass filter frequency, Marker lowpass filter order, Forceplate lowpass filter frequency, Forceplate lowpass filter order, IkAccuracy, First frame to process, Last frame to process]


Analyses:
  Generate Session:
    Type: Instantiate template
    Export session: Yes
    Export measurements: c3d
    Template: Templates\template_xml.php
    Output file: sessionConfig.yaml
  CGM10 Processing:
    Type: Compound
    Components: [Generate Session, Internal CGM1 processing]
  CGM11 Processing:
    Type: Compound
    Components: [Generate Session, Internal CGM11 processing]
  CGM21 Processing:
    Type: Compound
    Components: [Generate Session, Internal CGM21 processing]
  CGM22 Processing:
    Type: Compound
    Components: [Generate Session, Internal CGM22 processing]
  CGM23 Processing:
    Type: Compound
    Components: [Generate Session, Internal CGM23 processing]
  CGM24 Processing:
    Type: Compound
    Components: [Generate Session, Internal CGM24 processing]
  CGM25 Processing:
    Type: Compound
    Components: [Generate Session, Internal CGM25 processing]
  CGM26 Processing:
    Type: Compound
    Components: [Generate Session, Internal CGM26 processing]
  Internal CGM1 processing:
    Type: External program
    Program display name: QTM_CGM1_workflow
    Export session: No
    Export measurements: c3d
  Internal CGM11 processing:
    Type: External program
    Program display name: QTM_CGM11_workflow
    Export session: No
    Export measurements: c3d
  Internal CGM21 processing:
    Type: External program
    Program display name: QTM_CGM21_workflow
    Export session: No
    Export measurements: c3d
  Internal CGM22 processing:
    Type: External program
    Program display name: QTM_CGM22_workflow
    Export session: No
    Export measurements: c3d
  Internal CGM23 processing:
    Type: External program
    Program display name: QTM_CGM23_workflow
    Export session: No
    Export measurements: c3d
  Internal CGM24 processing:
    Type: External program
    Program display name: QTM_CGM24_workflow
    Export session: No
    Export measurements: c3d
  Internal CGM25 processing:
    Type: External program
    Program display name: QTM_CGM25_workflow
    Export session: No
    Export measurements: c3d
  Internal CGM26 processing:
    Type: External program
    Program display name: QTM_CGM26_workflow
    Export session: No
    Export measurements: c3d
  CGM2 Processing:
    Type: External program
    Program display name: Python
    Export session: No
    Export measurements: c3d
    Arguments: [$TemplateDirectory$Scripts\src\CGM2\CGM_workflow.py, --working-directory, $WorkingDirectory$]
  
Fields:
  Patient ID:
    Type: String
    Force: Yes
    Inherit: Connect
  Case ID:
    Type: String
    Inherit: Connect
  First name:
    Type: String
    Inherit: Connect
    Force: Yes
  Last name:
    Type: String
    Inherit: Connect
    Force: Yes
  Date of birth:
    Type: Date
  Session date:
    Type: Date
    Readonly: Yes
  Creation date:
    Type: Date
    Readonly: Yes
  Creation time:
    Type: TimeOfDay
    Readonly: Yes
  Height:
    Type: Float
    Quantity: Length
    Unit: Meters
    Decimals: 2
    Inherit: Copy
    Max: 2.5
    Min: 0
  Weight:
    Type: Float
    Quantity: Mass
    Unit: Kilograms
    Decimals: 1
    Inherit: Copy
    Max: 300
    Min: 1
  Sex:
    Type: Enum
    Values: [unspecified, female, male]
  Measurement type:
    Type: Enum
    Values: [Static, Dynamic]
    Default: Dynamic
    Hidden: Yes
  Model:
    Type: Enum
    Values: [unspecified, Full Body, Lower Limb, Foot Markers+Sacrum, No, Foot+Sacrum+Arms, Foot]
    Default: unspecified
    Inherit: Copy
    Hidden: Yes
  CGM2 Model:
    Type: Enum
    Values: ["CGM1.0", "CGM1.1", "CGM2.1-HJC", "CGM2.2-IK", "CGM2.3-skinClusters", "CGM2.4-ForeFoot", "CGM2.5-UpperLimb", "CGM2.6-Knee Calibration"]
    Default: "CGM2.3-skinClusters"
    Inherit: Copy
  Event mode:
    Type: Enum
    Values: [Manual, Multiple forceplates, No forceplate (automatic), No forceplate (using template file), Single forceplate]
    Default: Multiple forceplates
  Test condition:
    Type: String
    Default: unspecified
  Test operator:
    Type: String
    Default: unspecified
  Marker diameter:
    Type: Float
    Quantity: Length
    Unit: Millimeters
    Decimals: 0
    Inherit: Connect
    Max: 40
    Min: 0
    Default: 0.014
  Affected side:
    Type: Enum
    Default: unspecified
    Values: [unspecified, Left, Right, Both]
    Inherit: Connect
  Diagnosis:
    Type: String
    Default: unspecified
    Inherit: Connect
  Normative data:
    Type: Enum
    Values: [Adults, Children (all), Children (5-8 years), Children (9-11 years), Children (12-15 years), Children (16-18 years), Custom, Default]
    Default: Default
  Gross Motor Function Classification:
    Type: Enum
    Values: [Level I, Level II, Level III, Level IV, Level V, unspecified]
    Default: unspecified
  Functional Mobility Scale:
    Type: String
    Default: unspecified
  Left foot normalised to static trial:
    Type: Boolean
    Default: Yes
    Display: checkbox
  Right foot normalised to static trial:
    Type: Boolean
    Default: Yes
    Display: checkbox
  Head normalised to static trial:
    Type: Boolean
    Default: Yes
    Display: checkbox
  Leg length left:
    Type: Float
    Quantity: Length
    Unit: millimeters
    Decimals: 0
    Inherit: Connect
    Max: 2000
    Min: 0
  Leg length right:
    Type: Float
    Quantity: Length
    Unit: millimeters
    Decimals: 0
    Inherit: Connect
    Max: 2000
    Min: 0
  Knee width left:
    Type: Float
    Quantity: Length
    Unit: millimeters
    Decimals: 0
    Inherit: Connect
    Max: 2000
    Min: 0
  Knee width right:
    Type: Float
    Quantity: Length
    Unit: millimeters
    Decimals: 0
    Inherit: Connect
    Max: 2000
    Min: 0
  Ankle width left:
    Type: Float
    Quantity: Length
    Unit: millimeters
    Decimals: 0
    Inherit: Connect
    Max: 2000
    Min: 0
  Ankle width right:
    Type: Float
    Quantity: Length
    Unit: millimeters
    Decimals: 0
    Inherit: Connect
    Max: 2000
    Min: 0
  Sole delta left:
    Type: Float
    Quantity: Length
    Unit: millimeters
    Decimals: 0
    Inherit: Connect
    Max: 2000
    Min: 0
  Sole delta right:
    Type: Float
    Quantity: Length
    Unit: millimeters
    Decimals: 0
    Inherit: Connect
    Max: 2000
    Min: 0
  Shoulder offset left:
    Type: Float
    Quantity: Length
    Unit: millimeters
    Decimals: 0
    Inherit: Connect
    Max: 2000
    Min: 0
  Shoulder offset right:
    Type: Float
    Quantity: Length
    Unit: millimeters
    Decimals: 0
    Inherit: Connect
    Max: 2000
    Min: 0
  Elbow width left:
    Type: Float
    Quantity: Length
    Unit: millimeters
    Decimals: 0
    Inherit: Connect
    Max: 2000
    Min: 0
  Elbow width right:
    Type: Float
    Quantity: Length
    Unit: millimeters
    Decimals: 0
    Inherit: Connect
    Max: 2000
    Min: 0
  Wrist width left:
    Type: Float
    Quantity: Length
    Unit: millimeters
    Decimals: 0
    Inherit: Connect
    Max: 2000
    Min: 0
  Wrist width right:
    Type: Float
    Quantity: Length
    Unit: millimeters
    Decimals: 0
    Inherit: Connect
    Max: 2000
    Min: 0
  Hand thickness left:
    Type: Float
    Quantity: Length
    Unit: millimeters
    Decimals: 0
    Inherit: Connect
    Max: 2000
    Min: 0
  Hand thickness right:
    Type: Float
    Quantity: Length
    Unit: millimeters
    Decimals: 0
    Inherit: Connect
    Max: 2000
    Min: 0
  Forceplate1:
    Type: Enum
    Values: [Auto, Left, Right, Invalid]
    Inherit: Connect
  Forceplate2:
    Type: Enum
    Values: [Auto, Left, Right, Invalid]
    Inherit: Connect
  Forceplate3:
    Type: Enum
    Values: [Auto, Left, Right, Invalid]
    Inherit: Connect
  Forceplate4:
    Type: Enum
    Values: [Auto, Left, Right, Invalid]
    Inherit: Connect
  Forceplate5:
    Type: Enum
    Values: [Auto, Left, Right, Invalid]
    Inherit: Connect
  Marker lowpass filter frequency:
    Type: Float
    Quantity: Frequency
    Unit: hertz
    Decimals: 1
    Default: 6
  Marker lowpass filter order:
    Type: Float
    Decimals: 0
    Default: 4
  Forceplate lowpass filter frequency:
    Type: Float
    Quantity: Frequency
    Unit: hertz
    Decimals: 1
    Default: 25
  Forceplate lowpass filter order:
    Type: Float
    Decimals: 0
    Default: 4
  Task:
    Type: Enum
    Values: [unspecified, Static, Functional knee calibration, Normal gait, Balance, Functional, Running, Fast gait, Slow gait, Modified gait, Internal, External, Jump, TUG, Dual task, Other]
    Default: unspecified
    Inherit: Copy
  Shoes:
    Type: Enum
    Values: [unspecified, Barefoot, Shoes, Normalisation, Other]
    Default: unspecified
    Inherit: Copy
  Prothesis_Orthosis:
    Type: Enum
    Values: [unspecified, No help, AFO, Shank prothesis, Thigh prothesis, Compensation, Plantar orthesis, Knee orthesis, Hip orthesis, Other]
    Default: No help
    Inherit: Copy
  External aid:
    Type: Enum
    Values: [unspecified, No help, Walker, Crutch(es), Stick(s), Tripod, Quadripod, Tibialis, Ischios, Gluteus, Gastrocnemius, Rectus Femoris, Other]
    Default: No help
    Inherit: Copy
  Personal aid:
    Type: Enum
    Values: [unspecified, No help, Security Person, Tactile Person]
    Default: No help
    Inherit: Copy
  Video:
    Type: Enum
    Values: [unspecified, Video, No]
    Default: unspecified
    Inherit: Copy
  Create PDF report:
    Type: Boolean
    Default: True
    Hidden: Yes
  Check Events In Mokka:
    Type: Boolean
    Default: True
    Hidden: Yes
  Anomaly Exception:
    Type: Boolean
    Default: True
    Hidden: Yes
  Moment Projection:
    Type: Enum
    Values: [Default, Distal, Proximal, JCS]
    Default: Default
    Inherit: Copy
  Knee functional calibration method:
    Type: Enum
    Values: [Calibration2Dof, SARA]
    Default: Calibration2Dof
    Inherit: Connect
  IkAccuracy:
    Type: Float
    Max: 0.001
    Min: 0.000000000001
    Default: 0.00001
    Decimals: 12
  First frame to process:
    Type: String
  Last frame to process:
    Type: String


Columns:
  Default column definitions:
    ID:
      Width: 225
      Fields:
        Default: Filename
        Patient: Patient ID
        CGM2 - Full body session: Test condition
    Creation:
      Width: 65
      Field: Creation date
    Last name:
      Width: 100
      Fields:
        Patient: Last name
    First name:
      Width: 100
      Fields:
        Patient: First name
    DOB:
      Width: 65
      Fields:
        Patient: Date of birth
    Comments:
      Field: Comments
      Width: 100