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installation.html
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<!DOCTYPE html>
<html>
<head>
<meta charset="utf-8">
<meta http-equiv="x-ua-compatible" content="ie=edge">
<meta name="viewport" content="width=device-width, initial-scale=1">
<title>Install readdy</title>
<link rel="stylesheet" href="/assets/css/readdy_documentation.css">
<link rel="canonical" href="https://readdy.github.io/installation.html">
<link href="https://fonts.googleapis.com/css?family=Inconsolata|Roboto+Mono|Lora|Lato|Source+Sans+Pro|Roboto+Slab|Merriweather" rel="stylesheet">
<link rel="stylesheet" href="https://readdy.github.io/libraries/perfect-scrollbar/css/perfect-scrollbar.min.css"/>
<link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/katex@0.10.1/dist/katex.min.css" integrity="sha384-dbVIfZGuN1Yq7/1Ocstc1lUEm+AT+/rCkibIcC/OmWo5f0EA48Vf8CytHzGrSwbQ" crossorigin="anonymous">
<script defer src="https://cdn.jsdelivr.net/npm/katex@0.10.1/dist/katex.min.js" integrity="sha384-2BKqo+exmr9su6dir+qCw08N2ZKRucY4PrGQPPWU1A7FtlCGjmEGFqXCv5nyM5Ij" crossorigin="anonymous"></script>
<script defer src="https://cdn.jsdelivr.net/npm/katex@0.10.1/dist/contrib/auto-render.min.js"></script>
<script>
document.addEventListener("DOMContentLoaded", function() {
renderMathInElement(document.body, {
delimiters: [
{left: "$$", right: "$$", display: true},
{left: "$", right: "$", display: false},
{left: "\\[", right: "\\]", display: true},
{left: "\\(", right: "\\)", display: false},
]
});
});
</script>
<link rel="icon" type="image/png" href="/assets/icon_black_32px.png">
</head>
<body>
<div class="side-wrapper" id="unique-side-container">
<div class="side">
<div class="side-logo logo-readdy"><a href="https://readdy.github.io/index.html"></a></div>
<div style="margin-right: 1.5rem; text-align: center;">
<a href="https://readdy.github.io/index.html">ReaDDy - A particle-based<br>reaction-diffusion simulator</a>
</div>
<div class="side-searchbar-wrapper">
<form action="https://readdy.github.io/search.html" method="get">
<input type="text" id="search-box" name="query" placeholder="Search ...">
</form>
</div>
<nav class="side-nav">
<a class="side-nav-item" href="https://readdy.github.io/index.html">Home</a>
<a class="side-nav-item active" href="https://readdy.github.io/installation.html">Install readdy</a>
<div class="nav-supergroup-delimiter">
<b>API</b>
</div>
<a class="side-nav-item" href="https://readdy.github.io/system.html">System configuration</a>
<a class="side-nav-item" href="https://readdy.github.io/simulation.html">Simulation</a>
<a class="side-nav-item" href="https://readdy.github.io/results.html">Post-processing</a>
<div class="nav-supergroup-delimiter">
<b>Examples</b>
</div>
<a class="side-nav-item" href="https://readdy.github.io/demonstration.html">Demonstration</a>
<a class="side-nav-item" href="https://readdy.github.io/validation.html">Validation</a>
<a class="side-nav-item" href="https://readdy.github.io/benchmark.html">Benchmark</a>
<div class="nav-supergroup-delimiter">
<b>Advanced topics</b>
</div>
<a class="side-nav-item" href="https://readdy.github.io/cookbook.html">Cookbook</a>
<a class="side-nav-item" href="https://readdy.github.io/development.html">Development</a>
<div class="nav-supergroup-delimiter">
<b>Legal notices</b>
</div>
<a class="side-nav-item" href="https://readdy.github.io/imprint.html">Imprint</a>
<a class="side-nav-item" href="https://readdy.github.io/software_license.html">Software license</a>
</nav>
<div class="github-wrapper">
<a href="https://github.com/readdy/readdy" style="width: 16rem; height:100%; position:absolute; top:0; left:0;">
<div class="github-text">ReaDDy on GitHub</div>
<div class="side-logo logo-github"></div>
</a>
</div>
<div class="side-logo logo-cmb"><a href="https://www.mi.fu-berlin.de/en/math/groups/comp-mol-bio/"></a></div>
</div>
</div>
<div class="main-container" id="unique-main-container">
<div class="main">
<article>
<h1 style="font-size: 2.7rem; padding-left: 0.5rem;">Install readdy</h1>
<h2 id="linux-and-mac">Linux and Mac</h2>
<p>Get <a href="https://docs.conda.io/en/latest/miniconda.html">miniconda</a>.</p>
<p>Create an environment (optional) and add the conda-forge channel to install readdy:</p>
<div class="language-bash highlighter-rouge"><div class="highlight"><pre class="highlight"><code><span class="c"># optional: create environment for readdy, switch to that environment</span>
conda create <span class="nt">-n</span> readdy <span class="nv">python</span><span class="o">=</span>3.9
conda activate readdy
<span class="c"># add conda-forge channel</span>
conda config <span class="nt">--env</span> <span class="nt">--add</span> channels conda-forge
conda config <span class="nt">--set</span> channel_priority strict
<span class="c"># install readdy</span>
conda <span class="nb">install </span>readdy
</code></pre></div></div>
<p>Check if it worked, start a python interpreter and do</p>
<div class="language-python highlighter-rouge"><div class="highlight"><pre class="highlight"><code><span class="o">>>></span> <span class="kn">import</span> <span class="nn">readdy</span>
</code></pre></div></div>
<p>If this does not return an error, you are ready to readdy.</p>
<h3 id="latest-build">Latest build</h3>
<p>To obtain the latest but possibly unstable build you can build from source by using <code class="highlighter-rouge">conda-build</code> on the recipe.</p>
</article>
<div class="foot">
© Copyright 2020 <a href="https://www.mi.fu-berlin.de/en/math/groups/comp-mol-bio/">AI4Science (former CMB) Group</a>
</div>
</div>
</div>
<script src="https://readdy.github.io/libraries/perfect-scrollbar/js/perfect-scrollbar.min.js"></script>
<script src="https://readdy.github.io/assets/js/scrollbar.js"></script>
</body>
</html>