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05_cortMod_parc_6mods.sh
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05_cortMod_parc_6mods.sh
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mkdir cortMod_parc_332_6mods
## using Gordon-2016 atlas for network ROIs; used all 332 ROIs (module 8 having 1 ROI excluded)
# module 1
fslmaths GDnet_ROI1.nii.gz -add GDnet_ROI4.nii.gz -add GDnet_ROI6.nii.gz -add GDnet_ROI12.nii.gz -add GDnet_ROI24.nii.gz -add GDnet_ROI25.nii.gz -add GDnet_ROI26.nii.gz -add GDnet_ROI29.nii.gz -add GDnet_ROI40.nii.gz -add GDnet_ROI44.nii.gz -add GDnet_ROI62.nii.gz -add GDnet_ROI73.nii.gz -add GDnet_ROI75.nii.gz -add GDnet_ROI78.nii.gz -add GDnet_ROI79.nii.gz -add GDnet_ROI80.nii.gz -add GDnet_ROI83.nii.gz -add GDnet_ROI85.nii.gz -add GDnet_ROI86.nii.gz -add GDnet_ROI89.nii.gz -add GDnet_ROI93.nii.gz -add GDnet_ROI94.nii.gz -add GDnet_ROI108.nii.gz -add GDnet_ROI116.nii.gz -add GDnet_ROI117.nii.gz -add GDnet_ROI120.nii.gz -add GDnet_ROI121.nii.gz -add GDnet_ROI123.nii.gz -add GDnet_ROI125.nii.gz -add GDnet_ROI126.nii.gz -add GDnet_ROI127.nii.gz -add GDnet_ROI128.nii.gz -add GDnet_ROI129.nii.gz -add GDnet_ROI130.nii.gz -add GDnet_ROI133.nii.gz -add GDnet_ROI142.nii.gz -add GDnet_ROI145.nii.gz -add GDnet_ROI146.nii.gz -add GDnet_ROI148.nii.gz -add GDnet_ROI149.nii.gz -add GDnet_ROI150.nii.gz -add GDnet_ROI151.nii.gz -add GDnet_ROI152.nii.gz -add GDnet_ROI156.nii.gz -add GDnet_ROI157.nii.gz -add GDnet_ROI158.nii.gz -add GDnet_ROI159.nii.gz -add GDnet_ROI161.nii.gz -add GDnet_ROI162.nii.gz -add GDnet_ROI165.nii.gz -add GDnet_ROI172.nii.gz -add GDnet_ROI173.nii.gz -add GDnet_ROI178.nii.gz -add GDnet_ROI179.nii.gz -add GDnet_ROI184.nii.gz -add GDnet_ROI186.nii.gz -add GDnet_ROI198.nii.gz -add GDnet_ROI200.nii.gz -add GDnet_ROI210.nii.gz -add GDnet_ROI220.nii.gz -add GDnet_ROI221.nii.gz -add GDnet_ROI222.nii.gz -add GDnet_ROI225.nii.gz -add GDnet_ROI226.nii.gz -add GDnet_ROI228.nii.gz -add GDnet_ROI229.nii.gz -add GDnet_ROI230.nii.gz -add GDnet_ROI231.nii.gz -add GDnet_ROI232.nii.gz -add GDnet_ROI240.nii.gz -add GDnet_ROI241.nii.gz -add GDnet_ROI242.nii.gz -add GDnet_ROI243.nii.gz -add GDnet_ROI250.nii.gz -add GDnet_ROI254.nii.gz -add GDnet_ROI259.nii.gz -add GDnet_ROI260.nii.gz -add GDnet_ROI266.nii.gz -add GDnet_ROI271.nii.gz -add GDnet_ROI272.nii.gz -add GDnet_ROI276.nii.gz -add GDnet_ROI278.nii.gz -add GDnet_ROI279.nii.gz -add GDnet_ROI280.nii.gz -add GDnet_ROI281.nii.gz -add GDnet_ROI283.nii.gz -add GDnet_ROI284.nii.gz -add GDnet_ROI285.nii.gz -add GDnet_ROI286.nii.gz -add GDnet_ROI287.nii.gz -add GDnet_ROI288.nii.gz -add GDnet_ROI289.nii.gz -add GDnet_ROI290.nii.gz -add GDnet_ROI291.nii.gz -add GDnet_ROI292.nii.gz -add GDnet_ROI295.nii.gz -add GDnet_ROI296.nii.gz -add GDnet_ROI297.nii.gz -add GDnet_ROI300.nii.gz -add GDnet_ROI301.nii.gz -add GDnet_ROI302.nii.gz -add GDnet_ROI306.nii.gz -add GDnet_ROI315.nii.gz -add GDnet_ROI316.nii.gz -add GDnet_ROI317.nii.gz -add GDnet_ROI319.nii.gz -add GDnet_ROI320.nii.gz -add GDnet_ROI321.nii.gz -add GDnet_ROI322.nii.gz -add GDnet_ROI323.nii.gz -add GDnet_ROI324.nii.gz -add GDnet_ROI325.nii.gz -add GDnet_ROI326.nii.gz -add GDnet_ROI327.nii.gz -add GDnet_ROI328.nii.gz -add GDnet_ROI331.nii.gz -add GDnet_ROI332.nii.gz -add GDnet_ROI333.nii.gz -bin cortMod_parc_332_6mods/cortNet_mod01.nii.gz
# module 2
fslmaths GDnet_ROI5.nii.gz -add GDnet_ROI7.nii.gz -add GDnet_ROI8.nii.gz -add GDnet_ROI9.nii.gz -add GDnet_ROI11.nii.gz -add GDnet_ROI15.nii.gz -add GDnet_ROI16.nii.gz -add GDnet_ROI17.nii.gz -add GDnet_ROI18.nii.gz -add GDnet_ROI20.nii.gz -add GDnet_ROI23.nii.gz -add GDnet_ROI30.nii.gz -add GDnet_ROI63.nii.gz -add GDnet_ROI67.nii.gz -add GDnet_ROI69.nii.gz -add GDnet_ROI74.nii.gz -add GDnet_ROI87.nii.gz -add GDnet_ROI88.nii.gz -add GDnet_ROI90.nii.gz -add GDnet_ROI96.nii.gz -add GDnet_ROI97.nii.gz -add GDnet_ROI98.nii.gz -add GDnet_ROI99.nii.gz -add GDnet_ROI100.nii.gz -add GDnet_ROI107.nii.gz -add GDnet_ROI109.nii.gz -add GDnet_ROI114.nii.gz -add GDnet_ROI115.nii.gz -add GDnet_ROI119.nii.gz -add GDnet_ROI122.nii.gz -add GDnet_ROI124.nii.gz -add GDnet_ROI131.nii.gz -add GDnet_ROI132.nii.gz -add GDnet_ROI134.nii.gz -add GDnet_ROI135.nii.gz -add GDnet_ROI136.nii.gz -add GDnet_ROI137.nii.gz -add GDnet_ROI138.nii.gz -add GDnet_ROI139.nii.gz -add GDnet_ROI140.nii.gz -add GDnet_ROI141.nii.gz -add GDnet_ROI144.nii.gz -add GDnet_ROI154.nii.gz -add GDnet_ROI155.nii.gz -add GDnet_ROI166.nii.gz -add GDnet_ROI169.nii.gz -add GDnet_ROI170.nii.gz -add GDnet_ROI175.nii.gz -add GDnet_ROI176.nii.gz -add GDnet_ROI177.nii.gz -add GDnet_ROI182.nii.gz -add GDnet_ROI183.nii.gz -add GDnet_ROI219.nii.gz -add GDnet_ROI237.nii.gz -add GDnet_ROI247.nii.gz -add GDnet_ROI252.nii.gz -add GDnet_ROI253.nii.gz -add GDnet_ROI255.nii.gz -add GDnet_ROI256.nii.gz -add GDnet_ROI258.nii.gz -add GDnet_ROI261.nii.gz -add GDnet_ROI263.nii.gz -add GDnet_ROI264.nii.gz -add GDnet_ROI265.nii.gz -add GDnet_ROI273.nii.gz -add GDnet_ROI277.nii.gz -add GDnet_ROI293.nii.gz -add GDnet_ROI298.nii.gz -add GDnet_ROI299.nii.gz -add GDnet_ROI307.nii.gz -add GDnet_ROI308.nii.gz -add GDnet_ROI309.nii.gz -add GDnet_ROI310.nii.gz -add GDnet_ROI311.nii.gz -add GDnet_ROI312.nii.gz -bin cortMod_parc_332_6mods/cortNet_mod02.nii.gz
# module 3
fslmaths GDnet_ROI21.nii.gz -add GDnet_ROI22.nii.gz -add GDnet_ROI27.nii.gz -add GDnet_ROI28.nii.gz -add GDnet_ROI42.nii.gz -add GDnet_ROI55.nii.gz -add GDnet_ROI60.nii.gz -add GDnet_ROI61.nii.gz -add GDnet_ROI71.nii.gz -add GDnet_ROI72.nii.gz -add GDnet_ROI76.nii.gz -add GDnet_ROI81.nii.gz -add GDnet_ROI82.nii.gz -add GDnet_ROI84.nii.gz -add GDnet_ROI91.nii.gz -add GDnet_ROI92.nii.gz -add GDnet_ROI95.nii.gz -add GDnet_ROI103.nii.gz -add GDnet_ROI105.nii.gz -add GDnet_ROI106.nii.gz -add GDnet_ROI110.nii.gz -add GDnet_ROI111.nii.gz -add GDnet_ROI112.nii.gz -add GDnet_ROI118.nii.gz -add GDnet_ROI147.nii.gz -add GDnet_ROI153.nii.gz -add GDnet_ROI168.nii.gz -add GDnet_ROI180.nii.gz -add GDnet_ROI181.nii.gz -add GDnet_ROI185.nii.gz -add GDnet_ROI187.nii.gz -add GDnet_ROI188.nii.gz -add GDnet_ROI189.nii.gz -add GDnet_ROI192.nii.gz -add GDnet_ROI199.nii.gz -add GDnet_ROI223.nii.gz -add GDnet_ROI234.nii.gz -add GDnet_ROI235.nii.gz -add GDnet_ROI236.nii.gz -add GDnet_ROI238.nii.gz -add GDnet_ROI245.nii.gz -add GDnet_ROI246.nii.gz -add GDnet_ROI248.nii.gz -add GDnet_ROI249.nii.gz -add GDnet_ROI274.nii.gz -add GDnet_ROI275.nii.gz -add GDnet_ROI282.nii.gz -add GDnet_ROI318.nii.gz -add GDnet_ROI329.nii.gz -bin cortMod_parc_332_6mods/cortNet_mod03.nii.gz
# module 4
fslmaths GDnet_ROI2.nii.gz -add GDnet_ROI13.nii.gz -add GDnet_ROI14.nii.gz -add GDnet_ROI19.nii.gz -add GDnet_ROI31.nii.gz -add GDnet_ROI32.nii.gz -add GDnet_ROI33.nii.gz -add GDnet_ROI34.nii.gz -add GDnet_ROI35.nii.gz -add GDnet_ROI36.nii.gz -add GDnet_ROI37.nii.gz -add GDnet_ROI38.nii.gz -add GDnet_ROI39.nii.gz -add GDnet_ROI43.nii.gz -add GDnet_ROI45.nii.gz -add GDnet_ROI46.nii.gz -add GDnet_ROI47.nii.gz -add GDnet_ROI48.nii.gz -add GDnet_ROI50.nii.gz -add GDnet_ROI51.nii.gz -add GDnet_ROI52.nii.gz -add GDnet_ROI54.nii.gz -add GDnet_ROI57.nii.gz -add GDnet_ROI58.nii.gz -add GDnet_ROI59.nii.gz -add GDnet_ROI113.nii.gz -add GDnet_ROI143.nii.gz -add GDnet_ROI163.nii.gz -add GDnet_ROI167.nii.gz -add GDnet_ROI174.nii.gz -add GDnet_ROI190.nii.gz -add GDnet_ROI191.nii.gz -add GDnet_ROI193.nii.gz -add GDnet_ROI194.nii.gz -add GDnet_ROI195.nii.gz -add GDnet_ROI196.nii.gz -add GDnet_ROI197.nii.gz -add GDnet_ROI201.nii.gz -add GDnet_ROI202.nii.gz -add GDnet_ROI204.nii.gz -add GDnet_ROI205.nii.gz -add GDnet_ROI206.nii.gz -add GDnet_ROI207.nii.gz -add GDnet_ROI208.nii.gz -add GDnet_ROI209.nii.gz -add GDnet_ROI211.nii.gz -add GDnet_ROI214.nii.gz -add GDnet_ROI215.nii.gz -add GDnet_ROI216.nii.gz -add GDnet_ROI217.nii.gz -add GDnet_ROI218.nii.gz -add GDnet_ROI262.nii.gz -add GDnet_ROI267.nii.gz -add GDnet_ROI294.nii.gz -add GDnet_ROI313.nii.gz -bin cortMod_parc_332_6mods/cortNet_mod04.nii.gz
# module 5
fslmaths GDnet_ROI3.nii.gz -add GDnet_ROI41.nii.gz -add GDnet_ROI49.nii.gz -add GDnet_ROI53.nii.gz -add GDnet_ROI56.nii.gz -add GDnet_ROI77.nii.gz -add GDnet_ROI101.nii.gz -add GDnet_ROI102.nii.gz -add GDnet_ROI164.nii.gz -add GDnet_ROI203.nii.gz -add GDnet_ROI212.nii.gz -add GDnet_ROI213.nii.gz -add GDnet_ROI239.nii.gz -add GDnet_ROI244.nii.gz -add GDnet_ROI251.nii.gz -add GDnet_ROI257.nii.gz -add GDnet_ROI268.nii.gz -add GDnet_ROI269.nii.gz -add GDnet_ROI270.nii.gz -add GDnet_ROI304.nii.gz -add GDnet_ROI305.nii.gz -bin cortMod_parc_332_6mods/cortNet_mod05.nii.gz
# module 6
fslmaths GDnet_ROI64.nii.gz -add GDnet_ROI66.nii.gz -add GDnet_ROI68.nii.gz -add GDnet_ROI160.nii.gz -add GDnet_ROI227.nii.gz -add GDnet_ROI233.nii.gz -add GDnet_ROI303.nii.gz -add GDnet_ROI330.nii.gz -add GDnet_ROI10.nii.gz -add GDnet_ROI65.nii.gz -add GDnet_ROI70.nii.gz -add GDnet_ROI104.nii.gz -add GDnet_ROI171.nii.gz -add GDnet_ROI224.nii.gz -bin cortMod_parc_332_6mods/cortNet_mod06.nii.gz