Hydra is a fully-automated pipeline that runs a suite of tools required to perform analysis using high-throughput RNA sequencing data.
The pipeline takes list of user-specified parameters in the form of a parameter file (which also contains pointers to the pipeline scripts folder and raw files to be run using the pipeline) and does a complete run, with added flexibility in how programs are utilized (skipping certain steps, etc).
An html report is generated, summarizing the output/results from each step, with links to the associated data (log files, QC reports etc.)
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