nb

notebook.ipynb

@@ -52,7 +52,7 @@
    "id": "63403efe",
    "metadata": {},
    "source": [
-    "Compile _demon_"
+    "Compile _demon_ (skip this step unless you use MyBinder service for notebook exploration)"
    ]
   },
   {
@@ -133,28 +133,12 @@
     "--cores 3"
    ]
   },
-  {
-   "cell_type": "markdown",
-   "id": "b6b91cc3",
-   "metadata": {},
-   "source": [
-    "## Example post-processing"
-   ]
-  },
-  {
-   "cell_type": "markdown",
-   "id": "90a8045e",
-   "metadata": {},
-   "source": [
-    "In order to quickly glance over simulations' results we shall utilize a [previously developed package](https://github.com/robjohnnoble/demonanalysis) (which is outside the scope if this repository)."
-   ]
-  },
   {
    "cell_type": "markdown",
    "id": "7317904e",
    "metadata": {},
    "source": [
-    "### Inspect the summary plots:"
+    "## Inspect summary plots:"
    ]
   },
   {
@@ -172,7 +156,7 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "Image(filename=\"tests/binder/output/simulations/00000000/summary.png\") "
+    "Image(filename=\"tests/binder/output/analyses/00000000/muller.png\") "
    ]
   },
   {
@@ -190,7 +174,7 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "Image(filename=\"tests/binder/output/simulations/00000001/summary.png\") "
+    "Image(filename=\"tests/binder/output/analyses/00000001/muller.png\") "
    ]
   },
   {
@@ -208,15 +192,15 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "Image(filename=\"tests/binder/output/simulations/00000002/summary.png\") "
+    "Image(filename=\"tests/binder/output/analyses/00000002/muller.png\") "
    ]
   },
   {
    "cell_type": "markdown",
    "id": "dfdd7551",
    "metadata": {},
    "source": [
-    "**The simple example above highlights that the higher the deme carrying capacity is the sooner the tumor evolves within the population.**"
+    "**The simple example above highlights that the higher the deme carrying capacity is the easier the tumor evolves within the population.**"
    ]
   },
   {