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@AstroPathJHU

AstroPath

AstroPath Platform Code
README.md

This project unites [Astro]nomy and [Path]ology concepts, emphasizing spatial biology to advance cancer immunotherapy research. We develop tools aimed at uncovering novel biomarkers and new biological mechanisms.

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  1. AstroPathPipeline AstroPathPipeline Public

    The AstroPath Pipeline was developed to process whole slide multiplex immunofluorescence data from microscope to database at single cell resolution.

    Python 18 3

  2. mIFTO mIFTO Public

    Multiplex Immunoflouresence Titration Optimization (mIFTO) R Package

    R 6 3

  3. MaSS MaSS Public

    MaSS (Merge a Single Sample); code to merge multipass inForm data

    MATLAB 2

  4. SegTool SegTool Public

    Create a segmentation tool for comparing inform and ML approaches while creating an unbiased ground truth

    MATLAB 1

Repositories

Showing 10 of 13 repositories
  • ROCPicker Public
    AstroPathJHU/ROCPicker’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Dec 19, 2024
  • ConvertIm3 Public

    The executable was written by Richard Wilton to extract the bitmap and metadata information from the akoya im3 image files.ConvertIm3Path is a powershell code, added by Benjamin Green and is a soft wrapper for the executable to run on the sample level and is dependent on the images being in the AstropathPipeline directory format. ConvertIm3Cohor…

    AstroPathJHU/ConvertIm3’s past year of commit activity
    PowerShell 0 MIT 0 0 0 Updated Dec 17, 2024
  • Thresholding Public
    AstroPathJHU/Thresholding’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Oct 18, 2024
  • mIFTO Public

    Multiplex Immunoflouresence Titration Optimization (mIFTO) R Package

    AstroPathJHU/mIFTO’s past year of commit activity
    R 6 MIT 3 3 0 Updated Sep 17, 2024
  • .github Public
    AstroPathJHU/.github’s past year of commit activity
    0 0 0 0 Updated Aug 26, 2024
  • SciScript-Python Public Forked from sciserver/SciScript-Python

    Python libraries for SciScript, Jupyter Notebooks

    AstroPathJHU/SciScript-Python’s past year of commit activity
    Python 0 21 0 0 Updated May 23, 2024
  • SegTool Public

    Create a segmentation tool for comparing inform and ML approaches while creating an unbiased ground truth

    AstroPathJHU/SegTool’s past year of commit activity
    MATLAB 0 MIT 1 0 0 Updated Mar 18, 2024
  • MaSS Public

    MaSS (Merge a Single Sample); code to merge multipass inForm data

    AstroPathJHU/MaSS’s past year of commit activity
    MATLAB 2 0 0 0 Updated Mar 12, 2024
  • deepzoom.py Public Forked from openzoom/deepzoom.py

    Python Deep Zoom Tools

    AstroPathJHU/deepzoom.py’s past year of commit activity
    Python 0 80 0 0 Updated Feb 9, 2024
  • checkout Public Forked from actions/checkout

    Action for checking out a repo

    AstroPathJHU/checkout’s past year of commit activity
    TypeScript 0 MIT 2,014 0 0 Updated Jul 6, 2023
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