Merge #1516

1516: Bump patch version r=charleskawczynski a=charleskawczynski This PR bumps the patch version for a new release. Co-authored-by: Charles Kawczynski <kawczynski.charles@gmail.com>
CliMA · Oct 24, 2023 · f31a62a · f31a62a · charleskawczynski · Oct 24, 2023
2 parents c8d48e1 + 7565d0b
commit f31a62a
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diff --git a/Project.toml b/Project.toml
@@ -1,7 +1,7 @@
 name = "ClimaCore"
 uuid = "d414da3d-4745-48bb-8d80-42e94e092884"
 authors = ["CliMA Contributors <clima-software@caltech.edu>"]
-version = "0.10.54"
+version = "0.10.55"
 
 [deps]
 Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e"

diff --git a/benchmarks/bickleyjet/Manifest.toml b/benchmarks/bickleyjet/Manifest.toml
@@ -20,9 +20,9 @@ version = "1.5.0"
 
 [[deps.Adapt]]
 deps = ["LinearAlgebra", "Requires"]
-git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24"
+git-tree-sha1 = "68c4c187a232e7abe00ac29e3b03e09af9d77317"
 uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e"
-version = "3.6.2"
+version = "3.7.0"
 weakdeps = ["StaticArrays"]
 
     [deps.Adapt.extensions]
@@ -160,13 +160,13 @@ version = "0.5.5"
 deps = ["Adapt", "BandedMatrices", "BlockArrays", "CUDA", "ClimaComms", "CubedSphere", "DataStructures", "DocStringExtensions", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "LinearAlgebra", "PkgVersion", "RecursiveArrayTools", "Requires", "RootSolvers", "SparseArrays", "Static", "StaticArrays", "Statistics", "UnPack"]
 path = "../.."
 uuid = "d414da3d-4745-48bb-8d80-42e94e092884"
-version = "0.10.53"
+version = "0.10.55"
 
 [[deps.CodecZlib]]
 deps = ["TranscodingStreams", "Zlib_jll"]
-git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092"
+git-tree-sha1 = "cd67fc487743b2f0fd4380d4cbd3a24660d0eec8"
 uuid = "944b1d66-785c-5afd-91f1-9de20f533193"
-version = "0.7.2"
+version = "0.7.3"
 
 [[deps.ColorSchemes]]
 deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"]
@@ -230,9 +230,9 @@ version = "0.6.2"
 
 [[deps.CubedSphere]]
 deps = ["Elliptic", "FFTW", "Printf", "ProgressBars", "SpecialFunctions", "TaylorSeries", "Test"]
-git-tree-sha1 = "131498c78453d02b4821d8b93f6e44595399f19f"
+git-tree-sha1 = "253193dfb0384646936c5ff3230b27a20d91261e"
 uuid = "7445602f-e544-4518-8976-18f8e8ae6cdb"
-version = "0.2.3"
+version = "0.2.4"
 
 [[deps.DataAPI]]
 git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c"
@@ -344,9 +344,9 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee"
 
 [[deps.FillArrays]]
 deps = ["LinearAlgebra", "Random"]
-git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434"
+git-tree-sha1 = "35f0c0f345bff2c6d636f95fdb136323b5a796ef"
 uuid = "1a297f60-69ca-5386-bcde-b61e274b549b"
-version = "1.6.1"
+version = "1.7.0"
 weakdeps = ["SparseArrays", "Statistics"]
 
     [deps.FillArrays.extensions]
@@ -508,9 +508,9 @@ uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240"
 
 [[deps.IntervalSets]]
 deps = ["Dates", "Random"]
-git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6"
+git-tree-sha1 = "3d8866c029dd6b16e69e0d4a939c4dfcb98fac47"
 uuid = "8197267c-284f-5f27-9208-e0e47529a953"
-version = "0.7.7"
+version = "0.7.8"
 weakdeps = ["Statistics"]
 
     [deps.IntervalSets.extensions]
@@ -528,9 +528,9 @@ version = "1.0.0"
 
 [[deps.JLFzf]]
 deps = ["Pipe", "REPL", "Random", "fzf_jll"]
-git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185"
+git-tree-sha1 = "9fb0b890adab1c0a4a475d4210d51f228bfc250d"
 uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c"
-version = "0.1.5"
+version = "0.1.6"
 
 [[deps.JLLWrappers]]
 deps = ["Artifacts", "Preferences"]
@@ -552,9 +552,9 @@ version = "2.1.91+0"
 
 [[deps.KernelAbstractions]]
 deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"]
-git-tree-sha1 = "4c5875e4c228247e1c2b087669846941fb6e0118"
+git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27"
 uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c"
-version = "0.9.8"
+version = "0.9.10"
 
     [deps.KernelAbstractions.extensions]
     EnzymeExt = "EnzymeCore"
@@ -995,9 +995,9 @@ version = "0.6.12"
 
 [[deps.RecursiveArrayTools]]
 deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"]
-git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7"
+git-tree-sha1 = "d7087c013e8a496ff396bae843b1e16d9a30ede8"
 uuid = "731186ca-8d62-57ce-b412-fbd966d074cd"
-version = "2.39.0"
+version = "2.38.10"
 
     [deps.RecursiveArrayTools.extensions]
     RecursiveArrayToolsMeasurementsExt = "Measurements"
@@ -1063,9 +1063,9 @@ uuid = "6462fe0b-24de-5631-8697-dd941f90decc"
 
 [[deps.SortingAlgorithms]]
 deps = ["DataStructures"]
-git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee"
+git-tree-sha1 = "5165dfb9fd131cf0c6957a3a7605dede376e7b63"
 uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c"
-version = "1.1.1"
+version = "1.2.0"
 
 [[deps.SparseArrays]]
 deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"]
@@ -1149,9 +1149,9 @@ version = "1.0.1"
 
 [[deps.Tables]]
 deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"]
-git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead"
+git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d"
 uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c"
-version = "1.11.0"
+version = "1.11.1"
 
 [[deps.Tar]]
 deps = ["ArgTools", "SHA"]
@@ -1187,15 +1187,18 @@ uuid = "a759f4b9-e2f1-59dc-863e-4aeb61b1ea8f"
 version = "0.5.23"
 
 [[deps.TranscodingStreams]]
-deps = ["Random", "Test"]
-git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769"
+git-tree-sha1 = "49cbf7c74fafaed4c529d47d48c8f7da6a19eb75"
 uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa"
-version = "0.9.13"
+version = "0.10.1"
+weakdeps = ["Random", "Test"]
+
+    [deps.TranscodingStreams.extensions]
+    TestExt = ["Test", "Random"]
 
 [[deps.URIs]]
-git-tree-sha1 = "b7a5e99f24892b6824a954199a45e9ffcc1c70f0"
+git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b"
 uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4"
-version = "1.5.0"
+version = "1.5.1"
 
 [[deps.UUIDs]]
 deps = ["Random", "SHA"]
@@ -1450,9 +1453,9 @@ version = "3.2.9+0"
 
 [[deps.fzf_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
-git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56"
+git-tree-sha1 = "47cf33e62e138b920039e8ff9f9841aafe1b733e"
 uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09"
-version = "0.29.0+0"
+version = "0.35.1+0"
 
 [[deps.gperf_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]

diff --git a/docs/Manifest.toml b/docs/Manifest.toml
@@ -37,9 +37,9 @@ version = "0.4.4"
 
 [[deps.Adapt]]
 deps = ["LinearAlgebra", "Requires"]
-git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24"
+git-tree-sha1 = "68c4c187a232e7abe00ac29e3b03e09af9d77317"
 uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e"
-version = "3.6.2"
+version = "3.7.0"
 weakdeps = ["StaticArrays"]
 
     [deps.Adapt.extensions]
@@ -241,9 +241,9 @@ version = "0.2.2"
 
 [[deps.CUDA_Runtime_jll]]
 deps = ["Artifacts", "CUDA_Driver_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"]
-git-tree-sha1 = "105eb8cf6ec6e8b93493da42ec789c3f65f7d749"
+git-tree-sha1 = "a38bc81bd6fdc7334de537aec3ae60e7b098daa2"
 uuid = "76a88914-d11a-5bdc-97e0-2f5a05c973a2"
-version = "0.9.2+3"
+version = "0.9.2+4"
 
 [[deps.Cairo_jll]]
 deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"]
@@ -277,7 +277,7 @@ version = "0.5.5"
 deps = ["Adapt", "BandedMatrices", "BlockArrays", "CUDA", "ClimaComms", "CubedSphere", "DataStructures", "DocStringExtensions", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "LinearAlgebra", "PkgVersion", "RecursiveArrayTools", "Requires", "RootSolvers", "SparseArrays", "Static", "StaticArrays", "Statistics", "UnPack"]
 path = ".."
 uuid = "d414da3d-4745-48bb-8d80-42e94e092884"
-version = "0.10.53"
+version = "0.10.55"
 
 [[deps.ClimaCoreMakie]]
 deps = ["ClimaCore", "Makie"]
@@ -549,9 +549,9 @@ version = "0.9.3"
 
 [[deps.Documenter]]
 deps = ["ANSIColoredPrinters", "AbstractTrees", "Base64", "Dates", "DocStringExtensions", "Downloads", "IOCapture", "InteractiveUtils", "JSON", "LibGit2", "Logging", "Markdown", "MarkdownAST", "Pkg", "PrecompileTools", "REPL", "RegistryInstances", "SHA", "Test", "Unicode"]
-git-tree-sha1 = "147a3cbb6ddcd9448fe5e6c426b347efc68f9c86"
+git-tree-sha1 = "662fb21ae7fad33e044c2b59ece832fdce32c171"
 uuid = "e30172f5-a6a5-5a46-863b-614d45cd2de4"
-version = "1.1.1"
+version = "1.1.2"
 
 [[deps.DocumenterCitations]]
 deps = ["AbstractTrees", "Bibliography", "Documenter", "Markdown", "MarkdownAST", "OrderedCollections", "Unicode"]
@@ -1025,9 +1025,9 @@ version = "0.20.9"
 
 [[deps.IntervalSets]]
 deps = ["Dates", "Random"]
-git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6"
+git-tree-sha1 = "3d8866c029dd6b16e69e0d4a939c4dfcb98fac47"
 uuid = "8197267c-284f-5f27-9208-e0e47529a953"
-version = "0.7.7"
+version = "0.7.8"
 weakdeps = ["Statistics"]
 
     [deps.IntervalSets.extensions]
@@ -1310,11 +1310,12 @@ version = "0.1.12"
 
 [[deps.LinearSolve]]
 deps = ["ArrayInterface", "ConcreteStructs", "DocStringExtensions", "EnumX", "EnzymeCore", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "Libdl", "LinearAlgebra", "MKL_jll", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "SuiteSparse", "UnPack"]
-git-tree-sha1 = "9f27ba34f5821a0495efb09ea3a465c31326495a"
+git-tree-sha1 = "158e45dd35cec1ecade0e554c0104ee89e772d82"
 uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae"
-version = "2.10.0"
+version = "2.11.1"
 
     [deps.LinearSolve.extensions]
+    LinearSolveBandedMatricesExt = "BandedMatrices"
     LinearSolveBlockDiagonalsExt = "BlockDiagonals"
     LinearSolveCUDAExt = "CUDA"
     LinearSolveEnzymeExt = "Enzyme"
@@ -1324,8 +1325,10 @@ version = "2.10.0"
     LinearSolveKrylovKitExt = "KrylovKit"
     LinearSolveMetalExt = "Metal"
     LinearSolvePardisoExt = "Pardiso"
+    LinearSolveRecursiveArrayToolsExt = "RecursiveArrayTools"
 
     [deps.LinearSolve.weakdeps]
+    BandedMatrices = "aae01518-5342-5314-be14-df237901396f"
     BlockDiagonals = "0a1fb500-61f7-11e9-3c65-f5ef3456f9f0"
     CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba"
     Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9"
@@ -1335,6 +1338,7 @@ version = "2.10.0"
     KrylovKit = "0b1a1467-8014-51b9-945f-bf0ae24f4b77"
     Metal = "dde4c033-4e86-420c-a63e-0dd931031962"
     Pardiso = "46dd5b70-b6fb-5a00-ae2d-e8fea33afaf2"
+    RecursiveArrayTools = "731186ca-8d62-57ce-b412-fbd966d074cd"
 
 [[deps.Literate]]
 deps = ["Base64", "IOCapture", "JSON", "REPL"]
@@ -1567,9 +1571,17 @@ version = "1.2.0"
 
 [[deps.NonlinearSolve]]
 deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "EnumX", "FiniteDiff", "ForwardDiff", "LineSearches", "LinearAlgebra", "LinearSolve", "PrecompileTools", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SparseArrays", "SparseDiffTools", "StaticArraysCore", "UnPack"]
-git-tree-sha1 = "a5f1f836da05d513c4143576af8f5d8e51b759f5"
+git-tree-sha1 = "9203b3333c9610664de2e8cbc23cfd726663df7d"
 uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec"
-version = "2.2.1"
+version = "2.4.0"
+
+    [deps.NonlinearSolve.extensions]
+    NonlinearSolveFastLevenbergMarquardtExt = "FastLevenbergMarquardt"
+    NonlinearSolveLeastSquaresOptimExt = "LeastSquaresOptim"
+
+    [deps.NonlinearSolve.weakdeps]
+    FastLevenbergMarquardt = "7a0df574-e128-4d35-8cbd-3d84502bf7ce"
+    LeastSquaresOptim = "0fc2ff8b-aaa3-5acd-a817-1944a5e08891"
 
 [[deps.Observables]]
 git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93"
@@ -1936,9 +1948,9 @@ version = "0.6.12"
 
 [[deps.RecursiveArrayTools]]
 deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"]
-git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7"
+git-tree-sha1 = "d7087c013e8a496ff396bae843b1e16d9a30ede8"
 uuid = "731186ca-8d62-57ce-b412-fbd966d074cd"
-version = "2.39.0"
+version = "2.38.10"
 
     [deps.RecursiveArrayTools.extensions]
     RecursiveArrayToolsMeasurementsExt = "Measurements"
@@ -2033,9 +2045,9 @@ version = "0.6.39"
 
 [[deps.SciMLBase]]
 deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"]
-git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817"
+git-tree-sha1 = "151c322c309d879d114d1c0bee69c61d5933357f"
 uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462"
-version = "2.4.0"
+version = "2.4.3"
 
     [deps.SciMLBase.extensions]
     SciMLBasePyCallExt = "PyCall"
@@ -2122,9 +2134,9 @@ version = "0.8.4"
 
 [[deps.SimpleNonlinearSolve]]
 deps = ["ArrayInterface", "DiffEqBase", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "PackageExtensionCompat", "PrecompileTools", "Reexport", "SciMLBase", "StaticArraysCore"]
-git-tree-sha1 = "e308d089f5d0e733a017b61784c5813e672f760d"
+git-tree-sha1 = "15ff97fa4881133caa324dacafe28b5ac47ad8a2"
 uuid = "727e6d20-b764-4bd8-a329-72de5adea6c7"
-version = "0.1.22"
+version = "0.1.23"
 
     [deps.SimpleNonlinearSolve.extensions]
     SimpleNonlinearSolveNNlibExt = "NNlib"
@@ -2220,9 +2232,9 @@ weakdeps = ["ChainRulesCore"]
 
 [[deps.StableHashTraits]]
 deps = ["Compat", "SHA", "Tables", "TupleTools"]
-git-tree-sha1 = "19df33ca14f24a3ad2df9e89124bd5f5cc8467a2"
+git-tree-sha1 = "30edbce1c797dc7d4c74bc07b2b6a57b891bead3"
 uuid = "c5dd0088-6c3f-4803-b00e-f31a60c170fa"
-version = "1.0.1"
+version = "1.1.0"
 
 [[deps.StackViews]]
 deps = ["OffsetArrays"]
@@ -2351,9 +2363,9 @@ version = "1.0.1"
 
 [[deps.Tables]]
 deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"]
-git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead"
+git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d"
 uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c"
-version = "1.11.0"
+version = "1.11.1"
 
 [[deps.Tar]]
 deps = ["ArgTools", "SHA"]