Fail sample for small errors

Edinburgh-Genome-Foundry · Dec 10, 2024 · 06400d7 · 06400d7
1 parent 0888342
commit 06400d7
Showing 1 changed file with 5 additions and 0 deletions.
diff --git a/ediacara/Comparator.py b/ediacara/Comparator.py
@@ -729,6 +729,11 @@ def perform_comparison(self, assembly_path=None, vcf_path=None):
             self.vcf_table = self.create_vcf_table(vcf_path=vcf_path)
         # plt.close("all")
 
+        # Any error should fail the sample:
+        if self.vcf_table["T"].sum() > 0:
+            self.has_errors = True
+            self.has_small_diff = True
+
         # Prepare error text:
         # This has to be defined after all checks performed:
         self.error_dict = {