Apply cutoff to asm length

Edinburgh-Genome-Foundry · Dec 10, 2024 · 483ecf4 · 483ecf4
1 parent bedc2d4
commit 483ecf4
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/ediacara/Comparator.py b/ediacara/Comparator.py
@@ -368,8 +368,8 @@ def interpret_asm(self):
         self.len_asm = len(self.asm)
 
         self.asm_ref_len_diff = self.len_asm - self.len_ref
-        length_band = 50  # bp, smaller errors should be picked up by coverage, VCF etc
-        if abs(self.asm_ref_len_diff) > length_band:
+        length_band = self.diff_cutoff  # bp
+        if abs(self.asm_ref_len_diff) >= length_band:
             self.has_errors = True
             self.has_large_diff = True
             self.wrong_length = True