v2.2.0

[2.2.0] - 2018-07-06

• A nice novel feature: insertion variants are now output in vcf format! and with left-normalization (ie. if several equivalent positions are possible for a given insertion event, the left-most is output and the size of the ambiguity is indicated).
• Some improvements and bug fixes:
  • faster graph loading in fill module;
  • if multiple inserted sequence solutions, better handling of very similar ones, the number of output solutions can be reduced;
  • better handling of N stretches in the reference genome, resulting in less False Positive calls in find module;
  • better recall for very small heterozygous insertion variants (bug fix when the insertion is size smaller or equal than the ambiguity size).
  • a CI simple test for the Fill module with option -contig.