Merge pull request #100 from jmills-ncar/master

updated docs

doc/_build/html/_modules/index.html

@@ -154,6 +154,7 @@ <h1>All modules for which code is available</h1>
 <li><a href="wrfhydropy/core/job.html">wrfhydropy.core.job</a></li>
 <li><a href="wrfhydropy/core/job_tools.html">wrfhydropy.core.job_tools</a></li>
 <li><a href="wrfhydropy/core/model.html">wrfhydropy.core.model</a></li>
+<li><a href="wrfhydropy/core/namelist.html">wrfhydropy.core.namelist</a></li>
 <li><a href="wrfhydropy/core/outputdiffs.html">wrfhydropy.core.outputdiffs</a></li>
 <li><a href="wrfhydropy/core/schedulers.html">wrfhydropy.core.schedulers</a></li>
 <li><a href="wrfhydropy/core/simulation.html">wrfhydropy.core.simulation</a></li>

doc/_build/html/_sources/source/wrfhydropy.core.rst.txt

@@ -36,6 +36,14 @@ wrfhydropy.core.model module
     :undoc-members:
     :show-inheritance:
 
+wrfhydropy.core.namelist module
+-------------------------------
+
+.. automodule:: wrfhydropy.core.namelist
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
 wrfhydropy.core.outputdiffs module
 ----------------------------------
 

doc/_build/html/_sources/source/wrfhydropy.rst.txt

@@ -7,6 +7,7 @@ Subpackages
 .. toctree::
 
     wrfhydropy.core
+    wrfhydropy.tests
 
 Module contents
 ---------------

doc/_build/html/genindex.html

@@ -257,14 +257,16 @@ <h2 id="C">C</h2>
 <h2 id="D">D</h2>
 <table style="width: 100%" class="indextable genindextable"><tr>
   <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="source/wrfhydropy.core.html#wrfhydropy.core.namelist.dict_merge">dict_merge() (in module wrfhydropy.core.namelist)</a>
+</li>
       <li><a href="source/wrfhydropy.core.html#wrfhydropy.core.outputdiffs.OutputDiffs.diff_counts">diff_counts (wrfhydropy.core.outputdiffs.OutputDiffs attribute)</a>
 </li>
       <li><a href="source/wrfhydropy.core.html#wrfhydropy.core.outputdiffs.diff_namelist">diff_namelist() (in module wrfhydropy.core.outputdiffs)</a>
-</li>
-      <li><a href="source/wrfhydropy.core.html#wrfhydropy.core.domain.Domain">Domain (class in wrfhydropy.core.domain)</a>
 </li>
   </ul></td>
   <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="source/wrfhydropy.core.html#wrfhydropy.core.domain.Domain">Domain (class in wrfhydropy.core.domain)</a>
+</li>
       <li><a href="source/wrfhydropy.core.html#wrfhydropy.core.simulation.Simulation.domain">domain (wrfhydropy.core.simulation.Simulation attribute)</a>
 </li>
       <li><a href="source/wrfhydropy.core.html#wrfhydropy.core.domain.Domain.domain_config">domain_config (wrfhydropy.core.domain.Domain attribute)</a>
@@ -285,6 +287,8 @@ <h2 id="E">E</h2>
 <h2 id="G">G</h2>
 <table style="width: 100%" class="indextable genindextable"><tr>
   <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="source/wrfhydropy.core.html#wrfhydropy.core.namelist.JSONNamelist.get_config">get_config() (wrfhydropy.core.namelist.JSONNamelist method)</a>
+</li>
       <li><a href="source/wrfhydropy.core.html#wrfhydropy.core.model.get_git_revision_hash">get_git_revision_hash() (in module wrfhydropy.core.model)</a>
 </li>
   </ul></td>
@@ -301,13 +305,21 @@ <h2 id="G">G</h2>
 <h2 id="H">H</h2>
 <table style="width: 100%" class="indextable genindextable"><tr>
   <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="source/wrfhydropy.core.html#wrfhydropy.core.job.Job.hrldas_namelist">hrldas_namelist (wrfhydropy.core.job.Job attribute)</a>
+</li>
+      <li><a href="source/wrfhydropy.core.html#wrfhydropy.core.domain.Domain.hrldas_namelist_patches">hrldas_namelist_patches (wrfhydropy.core.domain.Domain attribute)</a>
+</li>
       <li><a href="source/wrfhydropy.core.html#wrfhydropy.core.model.Model.hrldas_namelists">hrldas_namelists (wrfhydropy.core.model.Model attribute)</a>
 </li>
       <li><a href="source/wrfhydropy.core.html#wrfhydropy.core.job.Job.hrldas_times">hrldas_times (wrfhydropy.core.job.Job attribute)</a>
 </li>
   </ul></td>
   <td style="width: 33%; vertical-align: top;"><ul>
       <li><a href="source/wrfhydropy.core.html#wrfhydropy.core.domain.Domain.hydro_files">hydro_files (wrfhydropy.core.domain.Domain attribute)</a>
+</li>
+      <li><a href="source/wrfhydropy.core.html#wrfhydropy.core.job.Job.hydro_namelist">hydro_namelist (wrfhydropy.core.job.Job attribute)</a>
+</li>
+      <li><a href="source/wrfhydropy.core.html#wrfhydropy.core.domain.Domain.hydro_namelist_patches">hydro_namelist_patches (wrfhydropy.core.domain.Domain attribute)</a>
 </li>
       <li><a href="source/wrfhydropy.core.html#wrfhydropy.core.model.Model.hydro_namelists">hydro_namelists (wrfhydropy.core.model.Model attribute)</a>
 </li>
@@ -328,6 +340,8 @@ <h2 id="J">J</h2>
       <li><a href="source/wrfhydropy.core.html#wrfhydropy.core.job.Job.job_id">job_id (wrfhydropy.core.job.Job attribute)</a>
 </li>
       <li><a href="source/wrfhydropy.core.html#wrfhydropy.core.simulation.Simulation.jobs">jobs (wrfhydropy.core.simulation.Simulation attribute)</a>
+</li>
+      <li><a href="source/wrfhydropy.core.html#wrfhydropy.core.namelist.JSONNamelist">JSONNamelist (class in wrfhydropy.core.namelist)</a>
 </li>
   </ul></td>
 </tr></table>
@@ -351,34 +365,32 @@ <h2 id="L">L</h2>
 <h2 id="M">M</h2>
 <table style="width: 100%" class="indextable genindextable"><tr>
   <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="source/wrfhydropy.tests.html#wrfhydropy.tests.test_WrfHydroClasses_public.mk_job_list">mk_job_list() (in module wrfhydropy.tests.test_WrfHydroClasses_public)</a>
+</li>
       <li><a href="source/wrfhydropy.core.html#wrfhydropy.core.model.Model">Model (class in wrfhydropy.core.model)</a>
 </li>
       <li><a href="source/wrfhydropy.core.html#wrfhydropy.core.simulation.Simulation.model">model (wrfhydropy.core.simulation.Simulation attribute)</a>
-</li>
-      <li><a href="source/wrfhydropy.core.html#wrfhydropy.core.model.Model.model_config">model_config (wrfhydropy.core.model.Model attribute)</a>
 </li>
   </ul></td>
   <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="source/wrfhydropy.core.html#wrfhydropy.core.model.Model.model_config">model_config (wrfhydropy.core.model.Model attribute)</a>
+</li>
       <li><a href="source/wrfhydropy.core.html#wrfhydropy.core.job.Job.model_end_time">model_end_time (wrfhydropy.core.job.Job attribute)</a>
 </li>
       <li><a href="source/wrfhydropy.core.html#wrfhydropy.core.job.Job.model_start_time">model_start_time (wrfhydropy.core.job.Job attribute)</a>
-</li>
-      <li><a href="source/wrfhydropy.core.html#wrfhydropy.core.domain.Domain.model_version">model_version (wrfhydropy.core.domain.Domain attribute)</a>
 </li>
   </ul></td>
 </tr></table>
 
 <h2 id="N">N</h2>
 <table style="width: 100%" class="indextable genindextable"><tr>
   <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="source/wrfhydropy.core.html#wrfhydropy.core.domain.Domain.namelist_patch_file">namelist_patch_file (wrfhydropy.core.domain.Domain attribute)</a>
+      <li><a href="source/wrfhydropy.core.html#wrfhydropy.core.namelist.Namelist">Namelist (class in wrfhydropy.core.namelist)</a>
 </li>
-      <li><a href="source/wrfhydropy.core.html#wrfhydropy.core.domain.Domain.namelist_patches">namelist_patches (wrfhydropy.core.domain.Domain attribute)</a>
+      <li><a href="source/wrfhydropy.core.html#wrfhydropy.core.schedulers.PBSCheyenne.nnodes">nnodes (wrfhydropy.core.schedulers.PBSCheyenne attribute)</a>
 </li>
   </ul></td>
   <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="source/wrfhydropy.core.html#wrfhydropy.core.schedulers.PBSCheyenne.nnodes">nnodes (wrfhydropy.core.schedulers.PBSCheyenne attribute)</a>
-</li>
       <li><a href="source/wrfhydropy.core.html#wrfhydropy.core.schedulers.PBSCheyenne.nproc">nproc (wrfhydropy.core.schedulers.PBSCheyenne attribute)</a>
 </li>
       <li><a href="source/wrfhydropy.core.html#wrfhydropy.core.domain.Domain.nudging_files">nudging_files (wrfhydropy.core.domain.Domain attribute)</a>
@@ -411,10 +423,14 @@ <h2 id="O">O</h2>
 <h2 id="P">P</h2>
 <table style="width: 100%" class="indextable genindextable"><tr>
   <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="source/wrfhydropy.core.html#wrfhydropy.core.namelist.Namelist.patch">patch() (wrfhydropy.core.namelist.Namelist method)</a>
+</li>
       <li><a href="source/wrfhydropy.core.html#wrfhydropy.core.schedulers.PBSCheyenne">PBSCheyenne (class in wrfhydropy.core.schedulers)</a>
 </li>
   </ul></td>
   <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="source/wrfhydropy.core.html#wrfhydropy.core.simulation.Simulation.pickle">pickle() (wrfhydropy.core.simulation.Simulation method)</a>
+</li>
       <li><a href="source/wrfhydropy.core.html#wrfhydropy.core.schedulers.PBSCheyenne.ppn">ppn (wrfhydropy.core.schedulers.PBSCheyenne attribute)</a>
 </li>
       <li><a href="source/wrfhydropy.core.html#wrfhydropy.core.model.Model.pre_compile_cmd">pre_compile_cmd (wrfhydropy.core.model.Model attribute)</a>
@@ -478,6 +494,18 @@ <h2 id="T">T</h2>
 <table style="width: 100%" class="indextable genindextable"><tr>
   <td style="width: 33%; vertical-align: top;"><ul>
       <li><a href="source/wrfhydropy.core.html#wrfhydropy.core.model.Model.table_files">table_files (wrfhydropy.core.model.Model attribute)</a>
+</li>
+      <li><a href="source/wrfhydropy.tests.html#wrfhydropy.tests.test_WrfHydroClasses_public.test_domain_nwm">test_domain_nwm() (in module wrfhydropy.tests.test_WrfHydroClasses_public)</a>
+</li>
+      <li><a href="source/wrfhydropy.tests.html#wrfhydropy.tests.test_WrfHydroClasses_public.test_model_nwm">test_model_nwm() (in module wrfhydropy.tests.test_WrfHydroClasses_public)</a>
+</li>
+  </ul></td>
+  <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="source/wrfhydropy.tests.html#wrfhydropy.tests.test_WrfHydroClasses_public.test_run_nwm">test_run_nwm() (in module wrfhydropy.tests.test_WrfHydroClasses_public)</a>
+</li>
+      <li><a href="source/wrfhydropy.tests.html#wrfhydropy.tests.test_WrfHydroClasses_public.test_setup_nwm">test_setup_nwm() (in module wrfhydropy.tests.test_WrfHydroClasses_public)</a>
+</li>
+      <li><a href="source/wrfhydropy.tests.html#wrfhydropy.tests.test_WrfHydroClasses_public.tmp_data_dir">tmp_data_dir() (in module wrfhydropy.tests.test_WrfHydroClasses_public)</a>
 </li>
   </ul></td>
 </tr></table>
@@ -505,19 +533,27 @@ <h2 id="W">W</h2>
 </li>
       <li><a href="source/wrfhydropy.core.html#module-wrfhydropy.core.job">wrfhydropy.core.job (module)</a>
 </li>
-  </ul></td>
-  <td style="width: 33%; vertical-align: top;"><ul>
       <li><a href="source/wrfhydropy.core.html#module-wrfhydropy.core.model">wrfhydropy.core.model (module)</a>
 </li>
+      <li><a href="source/wrfhydropy.core.html#module-wrfhydropy.core.namelist">wrfhydropy.core.namelist (module)</a>
+</li>
+  </ul></td>
+  <td style="width: 33%; vertical-align: top;"><ul>
       <li><a href="source/wrfhydropy.core.html#module-wrfhydropy.core.outputdiffs">wrfhydropy.core.outputdiffs (module)</a>
 </li>
       <li><a href="source/wrfhydropy.core.html#module-wrfhydropy.core.schedulers">wrfhydropy.core.schedulers (module)</a>
 </li>
       <li><a href="source/wrfhydropy.core.html#module-wrfhydropy.core.simulation">wrfhydropy.core.simulation (module)</a>
+</li>
+      <li><a href="source/wrfhydropy.tests.html#module-wrfhydropy.tests">wrfhydropy.tests (module)</a>
+</li>
+      <li><a href="source/wrfhydropy.tests.html#module-wrfhydropy.tests.test_WrfHydroClasses_public">wrfhydropy.tests.test_WrfHydroClasses_public (module)</a>
 </li>
       <li><a href="source/wrfhydropy.core.html#wrfhydropy.core.ioutils.WrfHydroStatic">WrfHydroStatic (class in wrfhydropy.core.ioutils)</a>
 </li>
       <li><a href="source/wrfhydropy.core.html#wrfhydropy.core.ioutils.WrfHydroTs">WrfHydroTs (class in wrfhydropy.core.ioutils)</a>
+</li>
+      <li><a href="source/wrfhydropy.core.html#wrfhydropy.core.namelist.Namelist.write">write() (wrfhydropy.core.namelist.Namelist method)</a>
 </li>
   </ul></td>
 </tr></table>

doc/_build/html/py-modindex.html

@@ -190,6 +190,11 @@ <h1>Python Module Index</h1>
        <td>&#160;&#160;&#160;
        <a href="source/wrfhydropy.core.html#module-wrfhydropy.core.model"><code class="xref">wrfhydropy.core.model</code></a></td><td>
        <em></em></td></tr>
+     <tr class="cg-1">
+       <td></td>
+       <td>&#160;&#160;&#160;
+       <a href="source/wrfhydropy.core.html#module-wrfhydropy.core.namelist"><code class="xref">wrfhydropy.core.namelist</code></a></td><td>
+       <em></em></td></tr>
      <tr class="cg-1">
        <td></td>
        <td>&#160;&#160;&#160;
@@ -205,6 +210,16 @@ <h1>Python Module Index</h1>
        <td>&#160;&#160;&#160;
        <a href="source/wrfhydropy.core.html#module-wrfhydropy.core.simulation"><code class="xref">wrfhydropy.core.simulation</code></a></td><td>
        <em></em></td></tr>
+     <tr class="cg-1">
+       <td></td>
+       <td>&#160;&#160;&#160;
+       <a href="source/wrfhydropy.tests.html#module-wrfhydropy.tests"><code class="xref">wrfhydropy.tests</code></a></td><td>
+       <em></em></td></tr>
+     <tr class="cg-1">
+       <td></td>
+       <td>&#160;&#160;&#160;
+       <a href="source/wrfhydropy.tests.html#module-wrfhydropy.tests.test_WrfHydroClasses_public"><code class="xref">wrfhydropy.tests.test_WrfHydroClasses_public</code></a></td><td>
+       <em></em></td></tr>
    </table>